Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq7 98.7 1e-15 >seq9 Length=15534364 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 169212 GATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAG 169271 ||||||||||||| ||||| ||||| |||||||| | | | ||||||||| | || | Sbjct 12953787 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 12953846 Query 169272 TGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACT 169331 | || || ||| | | ||||| || || | ||||| |||| ||||| |||||| Sbjct 12953847 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 12953906 Query 169332 TGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 | |||||||| || || |||||||| || || ||| Sbjct 12953907 TAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 12953941 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 168543 GTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTG 168602 |||| || |||||||| ||||| || | ||| | | |||| |||| || || | Sbjct 5747965 GTGTTTTGATGATCCCTGCCTTATTGACCGTAGCTTC----TGCATTATTGCCTTCATCG 5748020 Query 168603 CTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATG 168662 | || | || | ||||| || || || || ||||| | | || || | |||| Sbjct 5748021 CAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCTTTACTTTATG 5748080 Query 168663 GAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCT 168722 ||||||| || ||||| ||||| || |||| |||| || ||||| | ||||| | Sbjct 5748081 GAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTT 5748140 Query 168723 ACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 |||||||||||||||| || | | ||||||| | ||| ||||||| |||||| Sbjct 5748141 ACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGATCCTTA 5748195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564441515333760