Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq8 118 1e-21 seq9 105 8e-18 seq7 93.3 5e-14 seq1 84.2 3e-11 >seq8 Length=20165712 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 173794 CTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGAT 173853 || || || ||||| | || || |||||||| || || || || | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 173854 CCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGG 173913 || || || |||||||||||||| || ||||| ||| | || || ||||| | || ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 173914 ATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGA 173973 ||| || || ||||| || ||||| || | |||| || || || || ||||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 173974 GGTAACGCACTTTAA 173988 || ||||| |||||| Sbjct 4128808 GGAAACGCTCTTTAA 4128822 >seq9 Length=15534364 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 172535 TTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 172594 |||| || | |||||||| |||||| ||| |||||||| | | | ||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 172595 TAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 172654 | || | || ||||| ||| | | ||||| || || | ||||| |||| ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 172655 TCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 ||||||| ||||| ||||| ||||||||||| || || ||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 12953941 >seq7 Length=22540073 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 171912 CTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGT 171971 || ||| |||| ||||| ||||| |||| | ||||| || || || || || || Sbjct 5748001 CTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGT 5748060 Query 171972 TGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAA 172031 | |||||| | ||||| ||||| || ||||||||||| || |||| | || Sbjct 5748061 CTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGC 5748120 Query 172032 CGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTA 172091 || || || | ||||| ||||| || |||||||| ||| | || ||||| | | | | Sbjct 5748121 GGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATG 5748180 Query 172092 CAATGGTGGTCCTTATCAG 172110 |||||||| ||||||| || Sbjct 5748181 CAATGGTGATCCTTATAAG 5748199 >seq1 Length=32922458 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || |||||||| || ||||| || || || || Sbjct 21415858 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTTTGCATTCCGCACGGTGGGGG 21415917 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 ||||||||| | ||||||||||||||| || || | |||||||| Sbjct 21415918 TGGTCCTGGCATGGGTCCTATTGGTGTAAAGAAGCACTTAGCACCATTT 21415966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051111792320