Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 seq9 120 3e-22 seq8 84.2 2e-11 seq7 84.2 2e-11 >seq5 Length=20807039 Score = 131 bits (144), Expect = 2e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 164094 TTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC 164153 |||||| || ||||| || || ||||| || | ||| | |||||||||||||| ||||| Sbjct 7585992 TTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGAC 7586051 Query 164154 TTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGC 164213 |||||||| || ||||||||||||||||| || || |||||| || ||||||| || Sbjct 7586052 GTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGC 7586111 Query 164214 TATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTT 164273 |||||| || | || || ||||| || | | ||| || || || ||||| ||||| Sbjct 7586112 TATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 >seq9 Length=15534364 Score = 120 bits (132), Expect = 3e-22 Identities = 131/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 || || || |||||||||||||| || |||||||| ||||| || ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 163221 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 163222 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 163274 ||||| ||||| ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq8 Length=20165712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 164443 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGAT 164502 || ||||| || || ||||| || || ||||| || || || | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 164503 CCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGG 164562 ||||| || ||||||||||| ||||| || || | || ||||| || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 164563 TTAGCACCAGTTGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGA 164622 | ||| | || ||||| ||| || | ||||| || || || || || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 164623 GGTAATGCGCTTTAAT 164638 || || || ||||||| Sbjct 4128808 GGAAACGCTCTTTAAT 4128823 >seq7 Length=22540073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 162487 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 162546 |||||| |||| || | || | || || || || || | || || ||| || ||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 162547 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 162606 | | ||||| ||||| || ||||||||||| || |||| |||| || || || Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 162607 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 162666 | ||||| || || || |||||||| ||||| ||||||||| ||| | || |||| | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 162667 CCTT 162670 |||| Sbjct 5748191 CCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583916362400