Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq8 165 9e-36 seq5 109 6e-19 seq7 104 3e-17 >seq8 Length=20165712 Score = 165 bits (182), Expect = 9e-36 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 169305 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGAT 169364 || ||||| ||||| ||||| ||||||||||||||||| || ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 169365 CCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGG 169424 || || |||||||| ||||||||||| || || || || ||||| ||| ||||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 169425 TTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGA 169484 | ||| || ||||| |||||||| || || | ||||||||||| || || || || Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 169485 GGTAATGCCCT 169495 || || || || Sbjct 4128808 GGAAACGCTCT 4128818 >seq5 Length=20807039 Score = 109 bits (120), Expect = 6e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 168956 TTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 169015 ||| || || |||| || || |||||| | |||||| | |||||||| ||||| ||||| Sbjct 7585992 TTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGAC 7586051 Query 169016 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGC 169075 |||| ||||||||||||||||| || || || | || || | || ||||| | || Sbjct 7586052 GTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGC 7586111 Query 169076 CATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135 |||||||| | || || || || ||||| | | | || ||||| |||||||| || Sbjct 7586112 TATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 >seq7 Length=22540073 Score = 104 bits (114), Expect = 3e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 167142 GTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGG 167200 ||| ||||||||||||| || | | |||| | ||||| || || ||||||||| ||| Sbjct 5747378 GTTTTGATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTATCGCCTTCATCGC 5747436 Query 167201 TGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 167260 || ||||| || || || |||||||| ||||| || ||| ||||||| | | ||||| Sbjct 5747437 AGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGG 5747496 Query 167261 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTA 167320 || ||||||| || | || |||| ||||| | || | | ||||| || Sbjct 5747497 AAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTTTTA 5747550 Query 167321 TCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTT 167373 || | ||||| || ||| | | || || ||| |||||||||||||||| Sbjct 5747551 CCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTT 5747603 Score = 100 bits (110), Expect = 3e-16 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 167106 AGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTT 167165 ||||| || |||||| | || | || || | ||| ||||||||||| | || | Sbjct 5747931 AGCACCAAAAACCGTGACAACATCAGATGATTATGTGTTTTGATGATCCCTGCCTTATTG 5747990 Query 167166 GCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGT 167225 | | | | |||| ||| || |||||| ||| || |||| | || || |||||| Sbjct 5747991 ACCGTAGCT-TCTG---CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGT 5748046 Query 167226 ATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 167285 || | ||| || || || ||| | | ||||| ||||| || ||||||||||| || Sbjct 5748047 ATTCACGAGCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATT 5748106 Query 167286 GTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTC 167345 ||||| ||||| || || || | ||||| || || || |||||||| ||| | | Sbjct 5748107 ATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTT 5748166 Query 167346 GACGAGTGGTTGTACAATGGTGGTCCTT 167373 || |||| | | | |||||||| ||||| Sbjct 5748167 GATGAGTAGCTATGCAATGGTGATCCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607915908800