Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq7 116 6e-21 seq12 95.1 2e-14 >seq7 Length=22540073 Score = 116 bits (128), Expect = 6e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || |||| | ||||| || || || ||||| || || |||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || ||||||||||| || | |||| ||| || |||||| Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || ||||| ||||| || |||||||| ||| | ||||| || | ||| | |||||||| Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 215576 CCTT 215579 |||| Sbjct 5748191 CCTT 5748194 Score = 89.7 bits (98), Expect = 8e-13 Identities = 130/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || ||||| || ||||| || || || | ||||| ||| |||||||| Sbjct 5747426 GCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCT 5747485 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| || ||||||| || | || ||| ||| ||||| || Sbjct 5747486 TTACTTTATGGAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGA 5747539 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || ||||| ||||| | ||||| || ||| | ||||| | | | ||||||||||| Sbjct 5747540 TTGCACTTTTACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGT 5747599 Query 215576 CCTT 215579 |||| Sbjct 5747600 CCTT 5747603 >seq12 Length=17761961 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || ||||| || |||| || | || | ||||| ||| || ||||| Sbjct 6069403 GCCTTCATCGCAGCCCCTCCAGTACATATTGATGTTATTTGTGAGCCTGTTTCTTGTTCT 6069462 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || |||||| || | || | |||| || || |||||| Sbjct 6069463 TTACTTTATGGAAACAATATTATCTCTAGTACCATTATTCCTATTTTTGCGGCGATCGGA 6069522 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAAC 215547 || ||||| || | ||||||||||| ||||| Sbjct 6069523 TTGCACTTTTAGCTAATCTGGGAAGCCGCAAC 6069554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745081488237760