Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq8 134 2e-26 seq9 120 4e-22 seq5 102 1e-16 seq7 98.7 1e-15 >seq8 Length=20165712 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 184003 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGAT 184062 || ||||| || || ||||| ||||| ||||| || || ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 184063 CCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGG 184122 || ||||||||||| |||||||| || || || ||| | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 184123 TTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGA 184182 | ||| || ||||| || ||||| ||| ||||||| || |||||||| |||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 184183 GGCAATGCTCTTTGATG 184199 || || ||||||| ||| Sbjct 4128808 GGAAACGCTCTTTAATG 4128824 >seq9 Length=15534364 Score = 120 bits (132), Expect = 4e-22 Identities = 131/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 182511 GGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 182570 || || || ||||||||||| || || |||||||| ||||| || ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 182571 GCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTC 182630 ||||| |||||||| || || || |||||||| || | ||| | || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 182683 ||||| ||||| ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq5 Length=20807039 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 183640 TTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGT 183699 |||||||||| ||||| || |||||||| || ||| ||||| | | ||| | || || Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 183700 TTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGA 183759 || || || |||||||| ||||| || ||||||||||||||||| || || |||| | Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 183760 GCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGA 183818 || | || | ||||| ||||| | || || || || || | | ||| || || || Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||||| || ||| | | || | || || |||| |||||||||| | | ||| | Sbjct 5747934 ACCAAAAACCGTGACAACATCAGATGATTATGTGTTTTGATGATCCCTGCCTTATTGACC 5747993 Query 181875 GCAACCATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATC 181934 | | | |||| ||| |||| ||| | ||||| |||| | ||||| || ||||| Sbjct 5747994 GTAGCT-TCTG---CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATT 5748049 Query 181935 CGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTC 181994 | ||| || || || ||| | | ||||| ||||| || ||||||||||| || | Sbjct 5748050 CACGAGCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 5748109 Query 181995 CCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGAT 182054 || | || || || || | ||||| |||||||| ||||||||||| || ||||| Sbjct 5748110 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 5748169 Query 182055 GAGTGGCTGTATAACGGTGGTCCTT 182079 |||| ||| | || |||| ||||| Sbjct 5748170 GAGTAGCTATGCAATGGTGATCCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695908245600