Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq8 172 6e-38 seq9 134 2e-26 seq7 120 3e-22 seq5 104 3e-17 >seq8 Length=20165712 Score = 172 bits (190), Expect = 6e-38 Identities = 155/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 166983 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGAT 167042 || ||||| ||||| ||||| ||||||||||||||||| ||| | | ||||| || ||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 167043 CCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGG 167102 ||||| ||||| || ||||| ||||| || ||||| || || |||||||| ||| | ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 167103 ATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGA 167162 |||||| || ||||| |||||||| | | | |||||||||| |||||||| || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 167163 GGTAACGCTCTCTAA 167177 || |||||||| ||| Sbjct 4128808 GGAAACGCTCTTTAA 4128822 >seq9 Length=15534364 Score = 134 bits (148), Expect = 2e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 165490 ATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 165549 || |||||||| || || ||||| || ||||| | ||||||||| | || || ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 165550 CCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAAC 165609 |||||||| || || |||||||||||| | ||| |||| || ||||| |||||||| ||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 165610 GGTTTCAACTTCAACCAGTCTATTGTTGATAG 165641 || ||||| |||||||| ||| | |||||||| Sbjct 12953912 GGATTCAATTTCAACCAATCTGTAGTTGATAG 12953943 >seq7 Length=22540073 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 164860 ATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCA 164919 |||| ||| |||||||| || | || | || ||||||||||||| || |||||| | Sbjct 5748005 ATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCT 5748064 Query 164920 GGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCA 164979 |||| || | || || ||||| || ||||||||||| | |||| ||||| || Sbjct 5748065 AATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCG 5748124 Query 164980 ATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAAC 165039 |||||| | ||||| || || ||||||||||||||| | | ||||| | | | | ||| Sbjct 5748125 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAAT 5748184 Query 165040 GGTGGTCCTTA 165050 |||| |||||| Sbjct 5748185 GGTGATCCTTA 5748195 Score = 109 bits (120), Expect = 6e-19 Identities = 176/250 (70%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGT-TTGCTCG 164842 || ||| ||||||||||| | | |||||||||||| ||||| | |||| || | Sbjct 5748922 CATCAAAAACCGTCTTTACATTAGATGGTTCGGTGTTTCGATGAT-CACTGTCTTATTGT 5748980 Query 164843 CCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 |||| || || ||||||| ||| ||||| ||||| || | || || | |||||||| Sbjct 5748981 CCGCAACTTCTTTATTTATTATTGCCTTCATAGCTGCCCCTCAAGTAGATACTGATGGTA 5749040 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||| |||| |||||| || | | || ||||| ||||| |||| | Sbjct 5749041 TTCGTGAGCCTGATTTTGGTTCTTTACTTT---GTGGAAACATTATCTCCGGTGTCATTA 5749097 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||| | |||||| || | ||||| |||| | ||||||||||||| | || Sbjct 5749098 TTCCTACTTTTGCGGCAATCAGATTGCACTTTCATCCAACTTGGGAAGCTGCATCTATTA 5749157 Query 165023 ATGAATGGTT 165032 |||| | ||| Sbjct 5749158 ATGAGTAGTT 5749167 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 164816 GTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATC 164874 ||||| | |||||||| || | |||| || | ||| ||||||| || |||||| Sbjct 5747376 GTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATC 5747434 Query 164875 GCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTAC 164934 || || || || || || |||||||||||||| || ||||| | |||||| || | || Sbjct 5747435 GCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTAT 5747494 Query 164935 GGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTC 164994 || || ||||||| || | | ||| ||||| ||||| || | ||||| Sbjct 5747495 GGAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTTT 5747548 Query 164995 TATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAG 165054 || || | ||||| |||||| | | ||| | ||| ||||| ||||||||||| || Sbjct 5747549 TACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTTATGAG 5747608 Query 165055 TTGGTTGT 165062 || |||| Sbjct 5747609 TTAATTGT 5747616 >seq5 Length=20807039 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 166634 TTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGAC 166693 ||| || || |||| || || |||||| |||| ||| | |||||||| || || ||||| Sbjct 7585992 TTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGAC 7586051 Query 166694 ACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGC 166753 |||||||||||||||||||||| || || || | | || | || ||||| | || Sbjct 7586052 GTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGC 7586111 Query 166754 CATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813 || ||||| | || || || |||||||| | | | || ||||| |||||||| || Sbjct 7586112 TATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660715450880