Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-19 seq7 104 3e-17 >seq9 Length=15534364 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 170405 TTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCC 170464 |||| || | ||||||||||||||||| |||||||| |||| | | ||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 170465 TTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCAT 170524 | ||| | | ||||||||| | || ||||| ||| | | |||||| | || ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 170525 TTAACCTTAATGGATTTAACTTCAACCAGTC 170555 | ||||| || ||||| || |||||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq7 Length=22540073 Score = 104 bits (114), Expect = 3e-17 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 169742 GTGTCTTGATGATCCCATGTCT-ATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATC 169800 |||| ||||||||||| || || ||| | | ||| | ||| |||| ||| |||||| Sbjct 5747965 GTGTTTTGATGATCCC-TGCCTTATTGACCGTAGCTTC-TGCATTAT---TGCCTTCATC 5748019 Query 169801 GCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTAT 169860 ||||| | || | || || ||||| || || ||||| | ||| || | ||| Sbjct 5748020 GCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCTTTACTTTAT 5748079 Query 169861 GGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTC 169920 || ||||| || ||||||||||| || |||| |||| || ||||| | ||||| Sbjct 5748080 GGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTT 5748139 Query 169921 TATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 || || ||||||||||| ||| || | ||||||| | | | || |||| ||||||| Sbjct 5748140 TACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGATCCTTAT 5748196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847912572800