Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq7 93.3 5e-14 >seq9 Length=15534364 Score = 114 bits (126), Expect = 1e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 84077 GCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAAC 84136 |||||| || | | || ||||| || ||||| || || || || ||||| || |||| Sbjct 12953944 GCTATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAAT 12953885 Query 84137 ACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGA 84196 ||| | ||||| |||||||| || || || ||||||||||||||||| ||||| | ||| Sbjct 12953884 ACCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGA 12953825 Query 84197 ACGACTATTGTTGAAGGAAGCATACTGGAAGAT 84229 |||| ||||| || |||||| |||||||| Sbjct 12953824 ACGAGAGTTGTTAAAACTAGCATATTGGAAGAT 12953792 >seq7 Length=22540073 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 84657 ACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAA 84716 |||| || | |||||| ||||||| ||||| | || || | | ||| ||||||||| Sbjct 5748207 ACAATTAGCTTATAAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAA 5748148 Query 84717 ATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATG 84776 || || || || || | || || || ||| | |||| | ||||||||| || || Sbjct 5748147 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 5748088 Query 84777 TTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGG 84836 |||||||| || | | |||| || ||| ||||| | ||||| |||||||| | ||| Sbjct 5748087 TTGTTTCCATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGA 5748028 Query 84837 GGTGCACCAACGAATGCAATGATG 84860 | || | | ||| ||||| ||| Sbjct 5748027 GTGGCTGCGATGAAGGCAATAATG 5748004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273514308960