Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=26406337 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | | ||| || ||||| ||| Sbjct 25078550 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGCAGCATGGGAACAATTCCA 25078491 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| | ||||| ||||| |||||| Sbjct 25078490 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTTGCTCTAATATTGTGAATTGAG 25078431 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAAA 48537 | ||| || ||||| || ||| ||| |||||| ||| || |||||||||| Sbjct 25078430 ACACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCCGAG--AGAGTATCATAAA 25078373 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 |||| || || ||||||||| |||| Sbjct 25078372 TTCCCTCGATGCTATCATCTTTCAT 25078348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108715683680