Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-18 seq5 109 4e-18 seq2 102 7e-16 seq8 95.1 1e-13 seq12 93.3 3e-13 seq9 91.5 1e-12 >seq3 Length=29602667 Score = 111 bits (122), Expect = 1e-18 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 667219 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 667160 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 667159 GGTCGCATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCCACTGCTGCTGCTCTG 667100 Query 550520 GCATATGGA 550528 | |||||| Sbjct 667099 TCTTATGGA 667091 >seq5 Length=20807039 Score = 109 bits (120), Expect = 4e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| ||||| ||||| |||||||| ||| | ||| || ||||||||||| ||| Sbjct 16643960 CCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGG--ATGTTGTAATCAGCAAGA 16643903 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || || ||| || || || || || ||||| || || | ||||| || || |||||| Sbjct 16643902 GTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATT 16643843 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || || || || ||||| ||| || || ||||| ||||||| || | || || Sbjct 16643842 CCCTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTATCAG-AAGACTCCACCTC 16643784 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||| || ||||| | || |||||||| |||||||| Sbjct 16643783 AAGGGTGATAGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 16643739 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || ||||| ||||| || ||| | ||| || ||||||||| Sbjct 8159803 GCAGTGATCACAGTCCCTGCTTATTTCAATGATTCGCAAAGGACAGCAACCAAAGATGCT 8159744 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| | | ||||| ||||| || |||||||||||||| || | | Sbjct 8159743 GGCCGGATTGCTGGGTTGGAAGTTCTCCGTATCATAAATGAACCTACTGCAGCATCCTTG 8159684 Query 550520 GCATATGGACTTGATAA 550536 || ||||| |||| || Sbjct 8159683 GCTTATGGGTTTGAAAA 8159667 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 || ||||||||| ||||||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 16643732 CCGGAGACGGAGGACAAGATGAAGCGTGGACTCCTTCTGG--ATGTTGTAGTCAGCAAGA 16643675 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || |||||||| || || | ||||| || || || ||| Sbjct 16643674 GTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATT 16643615 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || ||||| || || || || || ||||| || || | | || | | || Sbjct 16643614 CCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAG-GACTCAACCTC 16643556 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| ||||| || || || || ||||| Sbjct 16643555 GAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 16643511 >seq2 Length=26406337 Score = 102 bits (112), Expect = 7e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||| ||||| | || ||||| || || || |||||| Sbjct 23823890 GCTGTGATTACAGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 23823831 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 23823830 GGTCGCATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTG 23823771 Query 550520 GCATATGGA 550528 | |||||| Sbjct 23823770 TCCTATGGA 23823762 Score = 87.8 bits (96), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| ||||| || | ||||| ||| || || ||| ||||||||||| | || Sbjct 20340465 CTGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCCAATGTG 20340524 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||| || ||||| || ||||| || || || ||||||||||||| || || Sbjct 20340525 CGCCCGTCTTCCAGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATCAGGAGAGATCCCC 20340584 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || || || || || || || || |||||||||| | | ||| || || Sbjct 20340585 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTATCAGAGCTCTCTAC-CTCAAG 20340643 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||| || || ||||| || || || || |||||||| Sbjct 20340644 AGTGATAGTCTTTCCTGTAAGGGTCTTCACAAAGATTTGCAT 20340685 >seq8 Length=20165712 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| |||||||| || || || || ||||||||| ||||| ||||| | Sbjct 3967511 GAGACGGAGGACAAGATGGAGAGTCGACTCCTTCTGAATATTGTAGTCAGCAAGAGTACG 3967570 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || ||||| || || |||||||| || || | |||||||||||||| || ||||| Sbjct 3967571 GCCTTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATCCCTTC 3967630 Query 563376 TTTATCTTGAATTTT 563390 ||||| ||||| || Sbjct 3967631 CTTATCCTGAATCTT 3967645 Score = 86.0 bits (94), Expect = 5e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 390811 ATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTTACGGTACC 390869 || |||| || ||||||| | ||||| | || | || || ||||||||| || || Sbjct 2650121 ATGCCATCCTCTCCATATAAGAACTGAATGACATCTCCCAA-GGAATTTCTTACAGTGCC 2650179 Query 390870 ATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAGT 390929 |||||||| || | || ||||| | || || | | || |||||||| ||||| Sbjct 2650180 ATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCGCTGGATATATCCAGT 2650239 Query 390930 GTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGAA 390989 || | || |||| ||||||| ||| | ||||||||| || ||||| | || ||||| Sbjct 2650240 CTCAGAGGTCTTAACAGCAGTATCAATCAGACCTTCTCTACCACCCATAGCGTGAAAGAA 2650299 Query 390990 AAATTC 390995 |||||| Sbjct 2650300 AAATTC 2650305 >seq12 Length=17761961 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 ||||||||| ||||||||||||| ||| | || ||||| | || || | | || Sbjct 406419 ATTTCTTACAGTACCATCATACTTCACTATGATATCTTCCATGGCCTTCACAAGTCGTCG 406478 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 |||||||| ||||| || | || || | |||||||| ||| | ||||||||| || | Sbjct 406479 CTGGATATATCCAGTCTCAGAGGTCTTCACTGCAGTATCAATCAGACCTTCTCTACCACC 406538 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | || ||||||||||| Sbjct 406539 CATAGCATGAAAGAAAAATTC 406559 >seq9 Length=15534364 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || || || ||||| || |||||| Sbjct 12042989 GCTGTTATTACTGTCCCAGCTTATTTCAATGATGCTCAGCGCCAGGCTACCAAGGATGCT 12042930 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | || | | |||||||||||||| ||||| || || || Sbjct 12042929 GGTAGAATTGCTGGACTAGAGGTGATGAGGATTATCAATGAACCCACTGCCGCAGCTCTG 12042870 Query 550520 GCATATGG 550527 ||||||| Sbjct 12042869 TCATATGG 12042862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295365385880