Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 3e-16 seq12 80.6 8e-11 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 3e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25902 TTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCT 25961 |||||||||||||||| | || ||||||| ||||| || | ||||| || || | Sbjct 5748009 TTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATT 5748068 Query 25962 CGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCG 26021 | ||| | || ||||||||||| || || || || | | || | ||| || |||| Sbjct 5748069 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 5748128 Query 26022 GACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCG 26081 || | || |||||||| || |||||||||| | | || |||| ||||| |||||| | Sbjct 5748129 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTG 5748188 Query 26082 GACCATATCAACTCATT 26098 || ||| | || ||| Sbjct 5748189 ATCCTTATAAGCTAATT 5748205 >seq12 Length=17761961 Score = 80.6 bits (88), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||||||||| || || ||| |||| |||| || ||||||| ||| Sbjct 6069394 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTACATATTGATGTTATTTGTGAGCCTGTT 6069453 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATC-AGGAGCAGTCGTCCCCTCCTCTAA 26013 || | || ||| | || ||||||||||| || || || | || | ||| | | | Sbjct 6069454 TCTTGTTCTTTACTTTATGGAAACAATATTATCTCTAGTACCATTATTCCTAT-TTTTGC 6069512 Query 26014 CGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || |||||| | || ||||| | ||||||||||| Sbjct 6069513 GGCGATCGGATTGCACTTTTAGCTAATCTGGGAAGC 6069548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726379091488