Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq7 111 5e-20 seq9 87.8 5e-13 seq12 80.6 8e-11 >seq7 Length=22540073 Score = 111 bits (122), Expect = 5e-20 Identities = 182/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 36634 AGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACT 36693 ||| |||| | |||| | | ||||| || | ||| || | || || ||| | ||| Sbjct 5748230 AGACACCATATAAAAAGAGTAGAACAATTAGCTTATAAGGATCACCATTGCATAGCTACT 5748171 Query 36694 CGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATG 36753 | || | | |||||||||||| |||||||| ||||| | ||||| || || | | Sbjct 5748170 CATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAG 5748111 Query 36754 GGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCAC 36813 | | || || |||||||| || ||||||||||| ||||| | ||||||||||| Sbjct 5748110 GAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAATTAGAGACAGGCTCGT 5748051 Query 36814 GAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTG 36873 |||||||||| ||||| | |||| || || | || ||||| ||||| | || Sbjct 5748050 GAATACCATCAATATCTATTGGAGTGGCTGCGATGAAGGCAAT----AATGCAGAAGCTA 5747995 Query 36874 CTGTTAAAAGTGCAGGGATCAT 36895 | || || | ||||||||||| Sbjct 5747994 CGGTCAATAAGGCAGGGATCAT 5747973 >seq9 Length=15534364 Score = 87.8 bits (96), Expect = 5e-13 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| || || || ||||| || || ||||| || || ||||||||||| | || Sbjct 12953941 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 12953882 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| || | ||| || | || ||||||||||||| |||||| |||||| || Sbjct 12953881 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 12953822 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAA 36240 || ||||| |||||||| |||||||| | || |||| Sbjct 12953821 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAA 12953781 >seq12 Length=17761961 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 36702 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATT 36761 ||||| |||||||||||| | || ||||| | ||||| || | | || ||| | | Sbjct 6069554 GTTGCGGCTTCCCAGATTAGCTAAAAGTGCAATCCGATCGCCG-CAAAAATAGGAATAAT 6069496 Query 36762 GCCCC-AGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 36820 | | |||||| || ||||||||||| ||||| | | || |||||||||| |||| | Sbjct 6069495 GGTACTAGAGATAATATTGTTTCCATAAAGTAAAGAACAAGAAACAGGCTCACAAATAAC 6069436 Query 36821 ATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 ||| |||| || ||||| || || | || || || | |||| Sbjct 6069435 ATCAATATGTACTGGAGGGGCTGCGATGAAGGCGATAATAAAT 6069393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454378560248