Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq7 111 5e-20 seq9 93.3 1e-14 >seq7 Length=22540073 Score = 111 bits (122), Expect = 5e-20 Identities = 168/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| || | ||| || |||| || | | | |||| || | | |||||||||||| Sbjct 5748207 ACAATTAGCTTATAAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAA 5748148 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 |||||||| ||||| | ||||| || ||| | || | || || || ||||| || Sbjct 5748147 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 5748088 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||||||||||| ||||| | ||||||||||| |||||||||| ||||| | ||| Sbjct 5748087 TTGTTTCCATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGA 5748028 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCAT 26375 | || || | || ||||| ||||| | || | || || | ||||||||||| Sbjct 5748027 GTGGCTGCGATGAAGGCAAT----AATGCAGAAGCTACGGTCAATAAGGCAGGGATCAT 5747973 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| | | ||| || ||||| || || ||| || || | | |||||| ||||| Sbjct 5747616 ACAATTAACTCATAAGGACCACCATTGTATAACTACCGATCAACAGATGCAGCCTCCCAT 5747557 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 ||||||| ||||| | | ||||| ||| | | ||| | || || ||| | Sbjct 5747556 TTTGGGTAAAAGTGCAATCTGATTGATGCAGAAG-CAGGATTAATGGAACT-AGA----G 5747503 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 |||||||||| ||||| | || || |||||||| ||||||||||| ||||| || ||| Sbjct 5747502 ATGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACTGGA 5747443 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCAT 26375 || || || | || || || | |||| | | ||| || || | | ||||||||| Sbjct 5747442 GGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCAT 5747384 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 1e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 |||||| || || || ||||| || || ||||| || || ||||||||||| | || Sbjct 12953941 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 12953882 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | ||| || | ||| || | || ||||||||||||| |||||| |||||| ||| Sbjct 12953881 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 12953822 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAA 25720 || ||||| |||||||| |||||||| | || |||| Sbjct 12953821 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAA 12953781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993578340912