Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq2 116 3e-21 seq5 107 2e-18 seq9 93.3 3e-14 >seq6 Length=21016138 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| || || || ||||| ||||| || || || |||||||| || | || | | || Sbjct 18970447 CGTAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCA 18970388 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| |||||||| ||||| |||| |||||| || || ||||||||||| || || Sbjct 18970387 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTG 18970328 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || || || ||| | || | ||||||||| | || || || || |||| Sbjct 18970327 TCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCAGAGGACTCAACCTCCAGGGTGATG 18970268 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| | || || || || |||||||| Sbjct 18970267 GTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 18970233 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/211 (68%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || || ||||| || | || | |||| || | ||| Sbjct 18552753 TGTAGGGTGGACTCCTTCTGGATGTTATAATCTGCAAGGGTGCGACCATCCTCAAGCTGC 18552812 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || | ||||| ||||||||||| ||||| | ||||||||||| || || || || || Sbjct 18552813 TTTCGAGCAAAGATCAAACGCTGCTGATCCAGTGGAATGCCTTCCTTGTCCTGGATCTTG 18552872 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTC--------CACTTCAAGAGTGACCGTTT 101438 || ||| | || | || || || | || | | ||||| |||| |||| Sbjct 18552873 GCCTTGACATTGTCAATTGTATCTGAGGACTCAACCTCAACTCCTCAAGGGTGATGGTTT 18552932 Query 101439 TGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| | ||| || ||||| |||||||| Sbjct 18552933 TCCCGGTGAGAGTCTTCACAAAAATCTGCAT 18552963 >seq2 Length=26406337 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || ||||||||||| || | || | | || ||| Sbjct 20340249 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTGCGCCCGTCCTCC 20340308 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| || | | ||| || || ||||| ||||| || || || || Sbjct 20340309 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 20340368 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| || ||| | || | ||||| || | ||||| || ||||| | || ||| Sbjct 20340369 ATTTTTGCCTTAACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAGAGTTATGGTCTTG 20340428 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || ||||| |||||||| Sbjct 20340429 CCGGTAAGAGTCTTCACAAAGATCTGCAT 20340457 >seq5 Length=20807039 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| | ||| || || || || || |||||||| || | || | | |||| |||| || Sbjct 6507223 ATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCCTCCAGCTG 6507282 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || |||||||| | ||||| || || || |||||||| || || || ||||| || Sbjct 6507283 CTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTT 6507342 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || || | || | ||||| |||| || || || || || | ||||||||||| Sbjct 6507343 TGCCTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTTTGCCGGT 6507402 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || ||||| Sbjct 6507403 CAATGTCTTGACAAAGATTTGCAT 6507426 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| || || ||||||||||| || | || | |||| || | ||| Sbjct 6507680 TGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCCAACGTCCGACCATCCTCAAGCTGC 6507739 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| ||||| || |||||||| || || || || ||||| Sbjct 6507740 TTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATTTTC 6507799 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || ||||||| || || || || Sbjct 6507800 GCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTC 6507859 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 6507860 AAGGTCTTCACAAAGATCTGCAT 6507882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| ||||| || ||||| || || | || | | || || | ||| Sbjct 6507452 TGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGCTGC 6507511 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| || || || ||||||||||| || || ||||| || Sbjct 6507512 TTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTC 6507571 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| |||| || || ||||| || | || ||||| || Sbjct 6507572 GCCTTCACGTTATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGTCTTGCCTGTC 6507631 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 6507632 AGGGTCTTGACAAAAATCTGCATG 6507655 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || || ||||| || || | || | |||| ||| Sbjct 9034756 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGTGTGCGTCCATCCTCC 9034697 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||||||| || ||||||||||||||||||||||| || ||||| ||||| || || || Sbjct 9034696 AATTGCTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 9034638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278342044284