Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq7 114 1e-20 seq12 86.0 7e-12 >seq9 Length=15534364 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273 |||| || || |||||||| ||||| ||| |||||||| ||||| | ||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCAT 163333 | ||||| | ||||| || | || ||||||||||| | ||| | |||||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 163334 TCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 ||||||| ||||| ||||| ||||||||||| || ||||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGA 12953940 >seq7 Length=22540073 Score = 114 bits (126), Expect = 1e-20 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 162551 GTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTG 162610 |||| |||||||||||| ||| | | | ||| | || ||| ||||| ||||| | Sbjct 5747965 GTGTTTTGATGATCCCTGCCTTATTGACCGTAGC----TTCTGCATTATTGCCTTCATCG 5748020 Query 162611 CAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATG 162670 |||| ||||| | ||||| |||||||| || ||||| | ||| | || |||| Sbjct 5748021 CAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCTTTACTTTATG 5748080 Query 162671 GTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCT 162730 | ||||| || ||||||||||| | |||||| ||| || || || | ||||| | Sbjct 5748081 GAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTT 5748140 Query 162731 ATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784 | || || |||||||| ||| || ||||||||| | | | ||||||| |||| Sbjct 5748141 ACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGATCCTT 5748194 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/224 (68%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603 ||||||||||| | ||||||| || ||| | | ||| | ||| || || ||||| Sbjct 5748947 TGGTTCGGTGTTTCGATGATCACTGTCTTATTGTCCGCAACTTCTTTATTTATTATTGCC 5749006 Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||||| || || |||| ||| |||| |||||||| | || |||| | ||||| | Sbjct 5749007 TTCATAGCTGCCCCTCAAGTAGATACTGATGGTATTCGTGAGCCTGATTTTGGTTCTTTA 5749066 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 || | ||| ||||| ||||| |||| | |||||| || || || | | Sbjct 5749067 CTTTGTGG---AAACATTATCTCCGGTGTCATTATTCCTACTTTTGCGGCAATCAGATTG 5749123 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTT 162767 ||||| |||| | |||||||| ||| || || |||||| ||| Sbjct 5749124 CACTTTCATCCAACTTGGGAAGCTGCATCTATTAATGAGTAGTT 5749167 >seq12 Length=17761961 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 162592 TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTT 162651 || || || || ||||| ||||| |||||||| |||| |||| ||| | || |||||| Sbjct 6069394 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTACATATTGATGTTATTTGTGAGCCTGTT 6069453 Query 162652 GCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAAT 162711 | |||| | || ||||| ||||| || |||||| || | | |||||| || Sbjct 6069454 TCTTGTTCTTTACTTTATGGAAACAATATTATCTCTAGTACCATTATTCCTATTTTTGCG 6069513 Query 162712 GCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACT 162753 || || || | ||||| || | ||||||||||| |||||| Sbjct 6069514 GCGATCGGATTGCACTTTTAGCTAATCTGGGAAGCCGCAACT 6069555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084717037280