Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq8 138 1e-27 seq5 111 2e-19 seq9 102 9e-17 seq7 93.3 5e-14 >seq8 Length=20165712 Score = 138 bits (152), Expect = 1e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 165429 CTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGAT 165488 || ||||| ||||| ||||| || || || || ||||| ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 165489 CCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGG 165548 || ||||||||||| |||||||||||||| || || || || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 165549 TTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGA 165608 ||||| || ||||| || |||||||| |||| ||||| || || || | || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 165609 GGCAACGCCCTTTAAT 165624 || ||||| ||||||| Sbjct 4128808 GGAAACGCTCTTTAAT 4128823 >seq5 Length=20807039 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 165081 TTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACC 165140 ||||| || ||||| || ||| ||||| | | ||| | |||||||| || || ||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 165141 CTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCT 165200 | ||||| || ||||||||||| ||||| || | || || | || ||||||| ||| Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 165201 ATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTT 165259 |||||||| | || || ||||| || ||| ||||| || || ||||||||||| Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 >seq9 Length=15534364 Score = 102 bits (112), Expect = 9e-17 Identities = 127/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTG 163668 || || || |||||||||||||| || |||||| | | | ||||||||| || Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 163669 GCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTC 163728 || || |||||||| || || || ||||| ||||| | || | || || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 163781 ||||| ||||| ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq7 Length=22540073 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 162994 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCA 163053 |||||| |||| || | || | || ||||| || || | ||||| ||| || ||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 163054 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 163113 | | ||||| ||||| || ||||||||||| || |||| |||| || || || Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173 | ||||| || || || |||||||| ||||| ||||||||| ||| | || |||| | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 163174 CCTT 163177 |||| Sbjct 5748191 CCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563209515518560