Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 224 2e-53 seq6 223 6e-53 >seq7 Length=22540073 Score = 224 bits (248), Expect = 2e-53 Identities = 571/861 (66%), Gaps = 21/861 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 17338026 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 17337967 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||| || |||| | | || ||| |||| | ||| Sbjct 17337966 CATCCAGTCGAAGGGGTTAACAACATTGTACATCTTCTTG-CAG-CCCAGCGCCATGAGC 17337909 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 | | |||| ||||| |||||||||| | ||| || |||||| || | ||| Sbjct 17337908 AAGCGATCAGCGACAAACTCGATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGC 17337849 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | ||||| || | |||||| Sbjct 17337848 GCGACGGGGAGTGCGTCGCAGACGAACTCCCTCTCGATGTCAACGGCATCAGCAACAATC 17337789 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | ||| | || ||| | | | |||| | ||| || Sbjct 17337788 TCGCGGACGCGGGACTCGTCAAGCTTGCTTCGGAGGAGTTCG---TAGACGAGGCACGCG 17337732 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | || ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 17337731 AAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGC 17337672 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||| ||| Sbjct 17337671 ATGAGTCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 17337612 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||||||| ||||| ||| | |||||| || | | |||||| Sbjct 17337611 TCGACGCAGGCGAACGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 17337556 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | | ||||||||| ||||| || | || | || | ||||| ||||||| Sbjct 17337555 GCGCATCGCCCAGTCGGCCTTGCGGCGGACGGCCGGGACGGTGACGATGGCGCGGAAGAG 17337496 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| ||| | |||| | ||||| ||||||| | ||||||||| Sbjct 17337495 GCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTC 17337439 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 17337438 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAACGCCCTCGCCTCGGCGACCTG 17337379 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || | ||| || | || ||||| ||| || || || || || || || Sbjct 17337378 CACGTCGGACATGAACCTGGACGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 17337319 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCC 48609 |||||| || || || | ||| || ||||||| ||| ||| | | |||| Sbjct 17337318 GAAGGCGAGCACGTGGGACACGAAGTGACGCTCGTCCGGGGAGAGGGAGGTGTCCCAGTG 17337259 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | |||| | ||||| || || ||| | |||||||| ||||| | || || || Sbjct 17337258 GCGCGCGTCGCCGGAGAGGTCGACCTCCTCCGCCGTCCAGAACGACGCCACCGCCTTCTT 17337199 Query 48670 GTACATGCCCCATATGTCCGG 48690 ||| | |||| || | ||| Sbjct 17337198 GTAGAACTCCCAGATCTGCGG 17337178 >seq6 Length=21016138 Score = 223 bits (246), Expect = 6e-53 Identities = 574/866 (66%), Gaps = 25/866 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| |||| || |||||| ||| Sbjct 6617773 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 6617832 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || || ||| | | ||| Sbjct 6617833 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTG-CA-GCCGAGCGCCATGAGC 6617890 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 | | | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 6617891 AAGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 6617950 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | ||||| || | || ||| Sbjct 6617951 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATC 6618010 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| | ||| | | ||| | ||| | | ||||||| | |||||| Sbjct 6618011 TCGCGGACGCGAGCCTCATCGAGCTTGCCCTGGAGGAGAT---CATAGAGGAGGCAGGCG 6618067 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | || ||||| ||| ||||||| |||||||||| ||| || ||| Sbjct 6618068 AAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGGC 6618127 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||| |||||||| || || ||| ||||| |||||||| || ||| Sbjct 6618128 ATGAGGCCACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCCC 6618187 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| || ||| | ||| | |||||| || | | |||||| Sbjct 6618188 TCGACGCAGGCGAATGCCACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 6618243 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | ||||| || ||||| || | || | || || ||||| ||||||| Sbjct 6618244 TCGCATGGCCCAATCGGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAG 6618303 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| ||| | |||| | ||||| ||||||| | ||||||||| Sbjct 6618304 GCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTC 6618360 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 6618361 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAATGCCCTCGCCTCGGCGACCTG 6618420 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || | ||| || | || ||||| || || || || || || || || Sbjct 6618421 CACGTCGGACATGAACCTGGACGCGAGGTTCTCGAGCACGATTCCGTCGGACGCCGCGAA 6618480 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC-----ATTCCAG 48607 |||||| || || || | ||| |||||||||| ||||||| ||| | |||| Sbjct 6618481 GAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGT--TGGGTGAAAGCGTCGTGTCCCAG 6618538 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | |||| | ||||| || || ||| | |||||||| ||||| | || || Sbjct 6618539 TGGCGCGCGTCGCCGGAGAGGTCGACCTCCTCCGCCGTCCAGAACGACGCCACCGCCTTC 6618598 Query 48668 TTGTACATGCCCCATATGTCCGGATA 48693 ||||| | |||| || | ||| || Sbjct 6618599 TTGTAGAACTCCCAGATCTGCGGGTA 6618624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532660270080