Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 168 1e-36 seq7 167 4e-36 >seq6 Length=21016138 Score = 168 bits (186), Expect = 1e-36 Identities = 493/743 (66%), Gaps = 38/743 (5%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG-AGA 25653 ||||| | || ||||| || || || || || || ||| |||||| || ||| || Sbjct 6618494 ACGTGCTCGCCTTCTTCGCGGCGTCCGACGGAATCGTGCTCGAGAACCTC-GCGTCCAGG 6618436 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||| | | |||||||| |||||||| |||||| Sbjct 6618435 TTCATGTCCGACGTGCAGGTCGCCGAGGCGAGGGCATTCTACGGCTTCCAGATCGCCATC 6618376 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| || | Sbjct 6618375 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTC 6618316 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| | | ||| | || | ||||| Sbjct 6618315 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCCGAT 6618256 Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||||||| |||||| || || ||||||| || |||||| || || || || Sbjct 6618255 TGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTGGCATT 6618200 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||| || || ||| || ||||| |||| ||||||||||||| || Sbjct 6618199 CGCCTGC-GTCGAGGGGATTTTCTTCTCGGGCTCGTTCTGCG-CCATCTTCTGGCTGAAA 6618142 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || |||||| || || ||||| ||||||||||||||| | | |||||||| Sbjct 6618141 AAGCGTGGCCTCATGCCGGGACTC-ACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 6618083 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA---CAAACCTTC 26066 ||||||| | || || |||||||| ||||| | | ||||| ||| | || Sbjct 6618082 TCTCCACTGCGACTTCGCCTGCCTCCTCTA------TGATCTCCTCCAGGGCAAGC--TC 6618031 Query 26067 TCAAGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 | ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 6618030 -GATGAGGCTCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGT 6617972 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | ||||||||| | ||||||||||| ||||| Sbjct 6617971 CTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACAT 6617912 Query 26184 TGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GT 26238 |||| || ||||||| |||| || | ||| || || || ||| | |||| || Sbjct 6617911 CGAGTTCGTCGCCGACCGCTTGCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAACGT 6617855 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 |||| ||||||||||||| ||||| ||| || || | || ||||||||||||||| Sbjct 6617854 -CGCC-AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTT 6617797 Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321 || ||| | ||||| ||||| || Sbjct 6617796 GAGAAGCGTGTCGGTGACTACCA 6617774 >seq7 Length=22540073 Score = 167 bits (184), Expect = 4e-36 Identities = 317/452 (70%), Gaps = 15/452 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG-AGA 25653 ||||| | || ||||| || ||||| || || || || |||||| || ||| || Sbjct 17337305 ACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTC-GCGTCCAGG 17337363 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||| | | |||||||| |||||||| |||||| Sbjct 17337364 TTCATGTCCGACGTGCAGGTCGCCGAGGCGAGGGCGTTCTACGGCTTCCAGATCGCCATC 17337423 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| || | Sbjct 17337424 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTC 17337483 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCG 25832 |||| || || || || | ||||||| ||| ||| || || | ||||| Sbjct 17337484 GAGAAGGACCGCCTCTTCCGCGCCATCGT-CACCGTCCCGGCCGTCCGCCGCAAGGCCGA 17337542 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| ||| |||||| || || ||||||| || ||||||||| || || | Sbjct 17337543 CTGGGCGATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCGCGT 17337598 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| || ||||| ||||| ||| || || || |||| |||||||||||||||| Sbjct 17337599 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 17337656 Query 25950 GCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || | |||| |||||||||||| ||| ||||||||||||||| | | ||||||| Sbjct 17337657 GAAG-CGTGGACTCATGCCCGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGG 17337715 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | |||||| | || || || ||||| ||||| Sbjct 17337716 GGCTCCACTGCGACTTCGCGTGCCTCGTCTAC 17337747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844660673280