Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq8 120 3e-22 seq5 120 3e-22 seq9 102 8e-17 seq7 95.1 1e-14 >seq8 Length=20165712 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 10637 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGAT 10696 || ||||| || || ||||| || || ||||| || || || ||| | || | |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 10697 CCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGG 10756 |||||||||||||| ||||| || || ||||| ||| | ||||| ||| ||||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 10757 ATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 |||||| | || || || || |||| || | ||||| || || ||||| || Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 4128803 >seq5 Length=20807039 Score = 120 bits (132), Expect = 3e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 10274 TTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGC 10333 |||||||| | |||||| ||||| || ||||| || || ||| | |||||| |||| || Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 10334 TTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGG 10393 ||||||||||||||| | || || || ||||||||||||||||| || || | || | | Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 10394 GCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACT 10437 || | |||| || || || || | || || |||||||| || Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCT 7586141 >seq9 Length=15534364 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 8963 TTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCC 9022 |||| || || |||||||||||||| ||||||||| ||| | || || |||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 9023 TCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTT 9082 | ||||| |||||||| || || || ||||| || || | || | || ||||||| Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 9083 TCAACCTCAATGGCTTCAACTTCAACCAGTC 9113 ||||||| || || ||||| |||||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq7 Length=22540073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8340 CTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGT 8399 || ||||| || ||| | || || |||| | || || || || || | ||| || || Sbjct 5748001 CTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGT 5748060 Query 8400 TGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAA 8459 || ||| | | || || ||||| || ||||||||||| || |||| | ||| Sbjct 5748061 CTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGC 5748120 Query 8460 CGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTA 8519 || || || | ||||| ||||| || |||||||| || ||| ||||||||| ||| | Sbjct 5748121 GGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATG 5748180 Query 8520 CAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCT 8574 ||| |||| |||||| |||| | ||| | | ||| | ||| |||| |||| Sbjct 5748181 CAATGGTGATCCTTATAAGCTAATTGTTCTACTCTTTTTATATGGTGTCTGTGCT 5748235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479922528000