Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 125 5e-23 seq8 118 7e-21 seq4 111 1e-18 seq11 107 1e-17 seq2 95.1 8e-14 seq3 91.5 1e-12 >seq5 Length=20807039 Score = 125 bits (138), Expect = 5e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| ||||| ||||| || || || | || |||||||| ||||| ||| Sbjct 16643956 AGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTG 16643897 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| || ||||| || || || || |||||||| ||| Sbjct 16643896 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCC 16643837 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGT 480733 ||||| ||||||||| |||||| ||||| ||||||| | | | | ||||||| Sbjct 16643836 TTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCT-CAAGGGT 16643778 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||||||||| ||||| Sbjct 16643777 GATAGTCTTGCCAGTCAAGGTCTTAACGAAGATTTG 16643742 Score = 104 bits (114), Expect = 2e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || ||||| || || || ||||| || || ||||| || || || | | Sbjct 6507893 AGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGG 6507952 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || ||||||||||| || ||||| || || || || || ||||| ||||| || ||| Sbjct 6507953 CCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCC 6508012 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| |||||||| ||||||| || || ||||||| | | | |||||||| Sbjct 6508013 TTGTCCTGAATCTTGGCTTTGACATTGTCGATTGTATCAGAGGATTCAACCTCAAGGGTT 6508072 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || || || || Sbjct 6508073 ATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTG 6508107 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| ||||||||||| || || || | || || ||||| ||||| Sbjct 16643731 CGGAGACGGAGGACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTG 16643672 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| || ||||| || ||||| || || || || || ||||| Sbjct 16643671 CGCCCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 16643612 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| || || ||||| |||||| ||||| || || | | | || ||| Sbjct 16643611 TCCTTATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGG 16643552 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| || || || || Sbjct 16643551 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 16643514 Score = 86.0 bits (94), Expect = 4e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 ||||||||||| || |||||||| |||||||||||| | || || || ||||| ||||| Sbjct 3008648 GATTTTTCATCCCCTAATATTGCCAAGGAAATGCATGTCGGGCATTTAAGATCAACAATC 3008707 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATG-TGAAGTACAAAGAATAAA 817218 ||||| || | ||| | | || | |||||| | ||| |||||| | || || Sbjct 3008708 ATTGGAGACACCCTTGCTCGCATGTTTGAATTCT-CAAATGTTGAAGTTCTCCGACGTAA 3008766 Query 817219 TCATATTGGTGATTGGGGAACACA 817242 |||| |||| || ||||| ||||| Sbjct 3008767 TCATGTTGGGGACTGGGGCACACA 3008790 >seq8 Length=20165712 Score = 118 bits (130), Expect = 7e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| |||||||| || || || || || ||| || ||||| ||||| Sbjct 3967508 ACGGAGACGGAGGACAAGATGGAGAGTCGACTCCTTCTGAATATTGTAGTCAGCAAGAGT 3967567 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||| || ||||| || ||||| || ||||||||||| || || Sbjct 3967568 ACGGCCTTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATCCC 3967627 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| || ||| ||||| || || | | | || |||| Sbjct 3967628 TTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATGGTGTCTGACGACTCAA-CCTCAA 3967686 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 |||| || || || |||||||| ||||| ||||| || Sbjct 3967687 GGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGAT 3967723 >seq4 Length=23326293 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| ||||| || || ||| ||| || || ||||| ||||| ||||| Sbjct 20245429 ACGAAGGCGGAGGACAAGGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCAGCAAGAGT 20245370 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| |||||||| |||||||| || || || || ||||| || Sbjct 20245369 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGTGGAATACC 20245310 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| || | ||||| || |||| | | || | ||| Sbjct 20245309 TTCCTTGTCCTGGATCTTGGCCTTCATGTTGTCAATTGTGTCAGAGGACTCAACCTCCAA 20245250 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||| ||||| ||||| || || Sbjct 20245249 -GGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 20245211 >seq11 Length=21046960 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | |||||||| || || || ||||| || || | || || || || |||| Sbjct 14353018 ATGCAGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCTACCAAGGATG 14353077 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||||||||| | ||||| || ||||| ||||| || || || Sbjct 14353078 CTGGAGTGATTGCTGGTCTTAATGTCATGCGTATCATCAATGAGCCAACTGCTGCAGCTA 14353137 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 14353138 TTGCTTATGGTCTTGACAAGAA 14353159 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | |||||||| || || || ||||| ||||| | || || || || |||| Sbjct 20823760 ATGCAGTCGTCACTGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 20823819 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||||||||| | ||||| || || || ||||| || || || Sbjct 20823820 CTGGAGTGATTGCTGGTCTTAATGTCATGCGTATCATCAACGAGCCAACTGCTGCAGCTA 20823879 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 20823880 TTGCGTATGGTCTTGACAAGAA 20823901 >seq2 Length=26406337 Score = 95.1 bits (104), Expect = 8e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || || ||||| ||||| || || | | || Sbjct 23823947 GTTTTGACCAAGATGAAGGAGACTGCTGAATCATACCTTGGCAAAACTGTTTCAAAGGCT 23823888 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || ||||| |||||||| ||||| |||||| |||| ||||| ||||| || ||||| || Sbjct 23823887 GTGATTACAGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCAACCAAGGATGCTGGT 23823828 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | ||||| || ||| |||| | | || || ||||||||||| || || || || | Sbjct 23823827 CGCATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTGTCC 23823768 Query 474860 TATGG 474864 ||||| Sbjct 23823767 TATGG 23823763 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | |||||| ||| || || | || || ||||| | || Sbjct 20340692 ACGGAGACGCAGAACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAACGT 20340751 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||| |||||||||||||| || || | || ||||||||||| || || Sbjct 20340752 GCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGGATACC 20340811 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||| ||||| ||||||| | | | ||||| Sbjct 20340812 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTATCAGAGCTTTCAACCTCAAG 20340871 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || ||||| || || || || Sbjct 20340872 TGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTG 20340910 Score = 89.7 bits (98), Expect = 3e-12 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || |||||||| || || || ||| || || ||| || ||||| || |||| | | Sbjct 20340927 CGAAGTACAAGGTGGAGGGTGGATTCCTTTTGAATATTGTAGTCAGCGAGTGTTCGGCCA 20340986 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || |||||||| ||||||||||| || | ||||| || || || || || | |||| Sbjct 20340987 TCCTCTAGTTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGGATGCCCT-CTTG 20341045 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| ||||||| || || || || | | | || ||||| || || Sbjct 20341046 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAATCTCAA-CCTCAAGAGTGAT 20341104 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | ||||||||| || || || Sbjct 20341105 GGTCTTGCCGGTCAAAGTCTTAACAAAGATCTG 20341137 >seq3 Length=29602667 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| Sbjct 667219 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 667160 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| |||| | | || || |||||||| || || || || || Sbjct 667159 GGTCGCATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCCACTGCTGCTGCTCTG 667100 Query 474857 GCTTATGG 474864 ||||||| Sbjct 667099 TCTTATGG 667092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178685261776