Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq7 102 9e-17 seq5 98.7 1e-15 seq4 96.9 4e-15 >seq9 Length=15534364 Score = 125 bits (138), Expect = 8e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 161602 ATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGG 161661 || |||||||| ||| || |||||||| || || | ||||||||| | ||||||||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 161662 CCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAAT 161721 ||||| || || || ||||||||||| | || | || || ||||| |||||||| || Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 161722 GGTTTCAACTTCAACCAGTCTATCGTTGATAG 161753 || ||||| |||||||| ||| | |||||||| Sbjct 12953912 GGATTCAATTTCAACCAATCTGTAGTTGATAG 12953943 >seq7 Length=22540073 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 160971 CATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGC 161030 ||| ||||||||| | | || | || | || || || || |||| || || ||| | Sbjct 5748004 CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTC 5748063 Query 161031 TGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGC 161090 | ||| | | ||||||||||| || ||||||||||| |||| ||| ||||| || Sbjct 5748064 TAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGC 5748123 Query 161091 TATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAA 161150 ||||| ||||||| ||||| || |||||||| ||| | | || || | ||| | ||| Sbjct 5748124 GATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAA 5748183 Query 161151 CGGTGGTCCTT 161161 |||| ||||| Sbjct 5748184 TGGTGATCCTT 5748194 >seq5 Length=20807039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 162576 TTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGG 162635 ||||| |||| | || || || ||||| || || |||||| | |||||| ||||||| Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 162636 TTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGT 162695 || ||||| |||||| | || || ||||| |||||||| || || || | | || | Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 162696 GCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACT 162739 || ||||| | ||||||||||| | || || ||||| || || Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCT 7586141 >seq4 Length=23326293 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| ||||| || ||||| || || |||| || ||||||||||| || ||| Sbjct 10570523 TACATCCTGGACGCGGCCGAGGAGGCCGGCATCGACCTTCCCTACTCGTGCCGCGCCGGC 10570582 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | || || || || ||||| ||| ||| |||||| ||||||||| Sbjct 10570583 GCCTGCTCCACATGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAATCCGACCAGTCA 10570642 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| ||||| | ||| ||| || || | | | || || ||||| | || || || Sbjct 10570643 TTCCTCGACGACGCCCAGGTCGGCTCCGGCTACGTGCTCACCTGTGTCGCGTACCCGACC 10570702 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGAT 158566 ||| | || || |||| ||||||| || ||||| |||| Sbjct 10570703 TCTGACAGCGTCATCCAGACGCACAAGGAGTCAGACCTGTACTGAT 10570748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547747117837920