Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq7 114 4e-21 seq9 93.3 1e-14 >seq7 Length=22540073 Score = 114 bits (126), Expect = 4e-21 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| || | ||| || | || || ||| | |||| || | | |||||||||||| Sbjct 5748207 ACAATTAGCTTATAAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAA 5748148 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 |||||||| ||||| | ||||| || ||| | || | || || || || || || Sbjct 5748147 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 5748088 Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||||||||||| ||||| | ||||||||||| |||||||||| || || | ||| Sbjct 5748087 TTGTTTCCATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGA 5748028 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCAT 18757 | || || | || ||||| ||||| | |||| |||| || | ||||||||||| Sbjct 5748027 GTGGCTGCGATGAAGGCAAT----AATGCAGAAGCTACGGTCAATAAGGCAGGGATCAT 5747973 Score = 89.7 bits (98), Expect = 2e-13 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| | | ||| || || || || |||||| || || | | |||||| ||||| Sbjct 5747616 ACAATTAACTCATAAGGACCACCATTGTATAACTACCGATCAACAGATGCAGCCTCCCAT 5747557 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 ||||||| ||||| | | ||||| ||| | | ||| | || || || | Sbjct 5747556 TTTGGGTAAAAGTGCAATCTGATTGATGCAGAAG-CAGGATTAATGGAACTA----GA-G 5747503 Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 |||||||||| ||||| | || || |||||||| ||||||||||| || || || ||| Sbjct 5747502 ATGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACTGGA 5747443 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCAT 18757 || || || | || || || | |||| | | || |||||| || | | ||||||||| Sbjct 5747442 GGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCAT 5747384 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 1e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| |||||||| || || || ||||||||||| || || | || || Sbjct 12953931 GATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTG 12953872 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || |||||||||||||||||||| |||| | | |||||| Sbjct 12953871 AACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTA 12953812 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAA 18102 || |||||||| |||||||| | || |||| Sbjct 12953811 AAACTAGCATATTGGAAGATTAATCGGCCAA 12953781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318378437128