Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq8 147 3e-30 seq5 116 5e-21 seq7 98.7 1e-15 >seq8 Length=20165712 Score = 147 bits (162), Expect = 3e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 4128818 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 4128759 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 4128758 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 4128699 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| ||||||||||| ||||| ||| Sbjct 4128698 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAGG 4128639 Query 101890 TTGAGAGCAAG 101900 || ||||| || Sbjct 4128638 TTCAGAGCCAG 4128628 >seq5 Length=20807039 Score = 116 bits (128), Expect = 5e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||| || ||| | |||||||| ||||| || | || || || Sbjct 7586171 AAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATA 7586112 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | |||| || | || | | || ||||| ||||||||||| |||||||| | | Sbjct 7586111 GCGCATAGCAAAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 7586052 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 ||||| ||||| || || || | |||||| | ||||| |||||||||||| || ||||| Sbjct 7586051 GTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAA 7585993 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 103872 AAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGT 103931 ||||| |||| || | ||| ||||||||| |||||| ||||||||||| || || |||| Sbjct 5748194 AAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGT 5748135 Query 103932 GAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACA 103991 | | || || || || | |||| || ||||||||||| || ||||| || || | Sbjct 5748134 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 5748075 Query 103992 TGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGA 104051 | ||| || ||| || || |||| || || ||||| | |||| ||||| | || Sbjct 5748074 GTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGAGTGGCTGCGATGA 5748015 Query 104052 AAGCAACGATGAAGCAG 104068 | |||| ||| || || Sbjct 5748014 AGGCAATAATGCAGAAG 5747998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513504972960