Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq8 113 5e-20 seq7 105 8e-18 >seq8 Length=20165712 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 4128822 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 4128763 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 4128762 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 4128703 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || |||||||| || || | Sbjct 4128702 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACG 4128643 Query 123046 GAGGTTAAGTGCTAG 123060 ||||| || || || Sbjct 4128642 TAGGTTCAGAGCCAG 4128628 >seq7 Length=22540073 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124741 CTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTA 124800 || ||||||| ||||||| | | | | |||||||||| ||| |||||||| |||||||| Sbjct 5748199 CTTATAAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 5748140 Query 124801 GAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACC 124860 ||||| | |||||| || || | |||| || ||||||||||| || ||||| || Sbjct 5748139 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 5748080 Query 124861 ATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGC 124920 ||| | |||||| | || || || || || || ||||| | |||| ||||| Sbjct 5748079 ATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGAGTGGCTGC 5748020 Query 124921 AATAAATGCAA 124931 || || |||| Sbjct 5748019 GATGAAGGCAA 5748009 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 124739 AACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGG 124798 |||| ||||||||||||||| || ||| | |||||||| ||| || ||||| ||||| Sbjct 5747610 AACTCATAAGGACCACCATTGTATAACTACCGATCAACAGATGCAGCCTCCCATTTTGGG 5747551 Query 124799 TAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTA 124858 || ||||| | || ||| | || | ||| || | || ||||| |||| Sbjct 5747550 TAAAAGTGCAATCTGATTGATGCAGAAGCAGGATTAATGGAACTAGAGA------TGTTT 5747497 Query 124859 CCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCT 124918 ||||| | |||||||| | || || || | || || || ||||| || ||||| ||| Sbjct 5747496 CCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCT 5747437 Query 124919 GCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAAC 124977 || || || || | || || ||| | | ||| || | |||| || ||||| | ||| Sbjct 5747436 GCGATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAAC 5747378 Query 124978 ACCAAA 124983 || ||| Sbjct 5747377 ACTAAA 5747372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998313150240