Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq9 125 1e-23 seq5 111 2e-19 seq7 104 3e-17 seq12 84.2 3e-11 >seq9 Length=15534364 Score = 125 bits (138), Expect = 1e-23 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 26841 ATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACC 26900 ||||| ||||| || ||||| ||||| ||||| || ||||||||||| || | ||| Sbjct 12953941 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 12953882 Query 26901 AAGTGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACG 26960 | || |||||||| || || || || ||||| ||||| | ||||||||| || ||||| Sbjct 12953881 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 12953822 Query 26961 TGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACC 26999 |||||||| || ||||||||||||||| || || || Sbjct 12953821 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCC 12953783 >seq5 Length=20807039 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || || || ||| | || || || || || || | ||||||||||| | || | || Sbjct 7586156 TCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAAAGCC 7586097 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | || | || || ||||||||||||||||| || ||||| | |||||| |||||||| Sbjct 7586096 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 7586037 Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAA 23944 || |||| |||||| | ||| | || ||||| || || || |||||| | |||||||| Sbjct 7586036 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCCGTGCAAAGAA 7585978 >seq7 Length=22540073 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 ||||| |||| || | | | ||||||| | ||||| |||||||| |||||||| |||| Sbjct 5748194 AAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGT 5748135 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | | ||||| || ||| | || | || |||||||| || || ||||| ||||| | Sbjct 5748134 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 5748075 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 | ||| || || || || ||||||| |||||||| | || | |||||||||| Sbjct 5748074 GTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGAGTGGCTGCGATGA 5748015 Query 27611 ATGCGACAATGAAGCAG 27627 | || | |||| || || Sbjct 5748014 AGGCAATAATGCAGAAG 5747998 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 |||||||||| || || ||| || ||| | ||||| || ||||| ||||||| |||| Sbjct 5747603 AAGGACCACCATTGTATAACTACCGATCAACAGATGCAGCCTCCCATTTTGGGTAAAAGT 5747544 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | | | ||||| ||| || || | || ||| ||| || ||||| | Sbjct 5747543 GCAATCTGATTGATGCAGAAGCAGGATTAATGGAACTAGAGATG------TTTCCATAAA 5747490 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 | ||||||| ||| || || |||||||| |||||||| || || || |||||||||| Sbjct 5747489 GTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGA 5747430 Query 27611 ATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACAC 27664 | |||| ||| || |||| |||||| | || | || |||||||||| |||| Sbjct 5747429 AGGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 5747376 >seq12 Length=17761961 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27465 TGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGC 27524 ||| |||||||||||| | || ||||| | ||||| || || | || | || | Sbjct 6069552 TGCGGCTTCCCAGATTAGCTAAAAGTGCAATCCGATCGCCGCAAAAATAGGAATAATGGT 6069493 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 || ||| || || ||||| ||||| | | |||| || ||| || |||| |||| | || Sbjct 6069492 ACTAGAGATAATATTGTTTCCATAAAGTAAAGAACAAGAAACAGGCTCACAAATAACATC 6069433 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||||| || || || ||||||||||| |||| ||| || Sbjct 6069432 AATATGTACTGGAGGGGCTGCGATGAAGGCGATAATAAA 6069394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494300175840