Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq6 114 2e-20 >seq7 Length=22540073 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| ||||||||||| || || || Sbjct 17337576 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 17337635 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| || || |||||| || || Sbjct 17337636 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAACGA 17337695 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 17337696 GCTCATCTCCCGCGACGAGGGGCTCCAC 17337723 >seq6 Length=21016138 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| || |||||||| || || || Sbjct 6618223 CTTCGCCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTT 6618164 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| |||| ||||| || |||||||| || || ||||| || || Sbjct 6618163 CTGCGCCATCTTCTGGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAACGA 6618104 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || |||||||||||| Sbjct 6618103 GCTCATCTCCCGCGACGAGGGTCTCCAC 6618076 Score = 102 bits (112), Expect = 1e-16 Identities = 270/409 (66%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||||||| || ||| |||| || ||| || ||||| ||||| || Sbjct 20728345 GGTGCCAAGATCCCCAAGGGGTGCCTCCTCGTCGGCCCGCCGGGGACGGGGAAGACGCTG 20728286 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| | || | | Sbjct 20728285 CTGGCGCGTGCCGTCGCCGGAGAGGCCGGCGTGCCGTTCTTCTCATGCGCCGCGTCGGAG 20728226 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| ||||| ||||| | ||||| || || | || Sbjct 20728225 TTCGTCGAGCTGTTCGTCGGTGTCGGTGCATCCAGGGTGAGGGATCTGTTCGAGAAGGCA 20728166 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||| ||||| |||||||||||||| || || | ||| || Sbjct 20728165 AAGGCCAAGGCGCCTTGCATTGTGTTCATCGATGAGATTGATGCTGTCGGGAGGCAGCGT 20728106 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | | | | ||||| ||||| || || || ||||| || || | | Sbjct 20728105 GGTGCGGGGCTCGGAGG--GGGGAATGATGAGAGGGAGCAGACCATTAACCAGCTCTTGA 20728048 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGG---CATTGTGGTTATTGCGGCCACTAATC 175630 | ||||||||||| |||| | | | ||| ||||||| |||| || || || Sbjct 20728047 CGGAGATGGATGGTTTTGCCGGGAACAGTGGTGTCATTGTG---CTTGCTGCAACGAACA 20727991 Query 175631 GCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | |||| | ||||||| ||| || || || || || | || ||||| Sbjct 20727990 GGCCGGATGTGCTTGATGCCGCGCTTCTCCGGCCAGGGAGGTTCGATCG 20727942 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| | ||||| ||||| || | | ||| Sbjct 18387895 TTTGTGGAGATGTTTGTGGGAGTTGGTGCCTCCCGAGTTCGTGATCTTTTCAAGAAGGCC 18387836 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || ||||| || ||||||| || ||||| || || | |||| | Sbjct 18387835 AAGGAGAATGCTCCTTGCATTGTATTTGTTGATGAAATCGATGCTGTTGGAAGGCAAAGA 18387776 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | ||| || || || || || || | ||||| |||| || Sbjct 18387775 GGGACAGGTATTGGTGGTGGAAACGATGAAAGGGAGCAGACTTTGAATCAGTTACTTACT 18387716 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| ||| | ||||| || ||||| || | | Sbjct 18387715 GAGATGGATGGTTTTGAGGGAAACACTGGAATTATTGTTATAGCTGCCACCAACAGGGCT 18387656 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| || | || | || || |||||||| Sbjct 18387655 GATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGA 18387615 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 177565 AACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTG 177623 |||| |||| || | ||| | |||| | || ||||||||||| ||| ||| || || || Sbjct 1439606 AACT-CCTCGACGGTGTGGGACTCCTCGGTAGCGACAACATAATCACCAGGCTGATCCTG 1439548 Query 177624 TTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGC 177683 || | ||| ||||||| || || ||||||||| ||| ||||| ||||||||||| Sbjct 1439547 CTGCAACATTCGCCACATTGCCTCGACATAGTCCCCAGCAAACCCCCAATCTCTGGCAGC 1439488 Query 177684 GTTGAGGTTACCGAG 177698 ||||||||| || Sbjct 1439487 AGAGAGGTTACCAAG 1439473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560