Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq9 105 8e-18 seq7 86.0 8e-12 >seq9 Length=15534364 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || |||||||| || || |||||||| ||||| || ||||| || | |||||| Sbjct 12953941 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 12953882 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||||||| | ||| || || | | ||| | ||||||||| | | | Sbjct 12953881 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 12953822 Query 8118 ACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAA 8158 | ||||||||| ||||| ||||||||||||| |||| Sbjct 12953821 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAA 12953781 >seq7 Length=22540073 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 8583 CTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642 || ||| ||| | || || | | | ||||||| | | |||||||||||||| || || Sbjct 5748199 CTTATAAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 5748140 Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702 ||||| ||||| || || |||| |||| | ||||||||||| || |||||||| Sbjct 5748139 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 5748080 Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATC 8747 ||| | || ||| | ||||| || ||||||| || ||||| Sbjct 5748079 ATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATC 5748035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615862307620640