Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq5 102 9e-17 seq7 86.0 7e-12 >seq9 Length=15534364 Score = 114 bits (126), Expect = 1e-20 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 166545 || || || ||||||||||| ||| || |||||||| || || || ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 166605 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 166658 ||||| ||||| ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq5 Length=20807039 Score = 102 bits (112), Expect = 9e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 167473 TTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGA 167532 |||||||| | | || || || || || || || |||||| |||||||| |||||||| Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 167533 TTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGT 167592 || || || ||||| |||| ||||||||||||||||| || || || | | || | Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 167593 GCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA 167651 || ||||| | || || ||||| | || || || || ||| | | ||| || ||||| Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 >seq7 Length=22540073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 165855 TATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 || || || ||| | ||||||||||| || | || | || || || || || | || Sbjct 5747995 TAGCTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGA 5748054 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 || ||| || |||| | | ||||| ||||| || ||||||||||| || |||| | Sbjct 5748055 GCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 5748114 Query 165975 TTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATG 166034 ||| || || || | ||||| || || || |||||||| ||||| |||| || | Sbjct 5748115 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTA 5748174 Query 166035 GCTCTATAACGGTGGTCCTT 166054 ||| | || |||| ||||| Sbjct 5748175 GCTATGCAATGGTGATCCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561247915812800