Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq9 116 1e-21 seq7 91.5 4e-14 seq12 89.7 1e-13 >seq9 Length=15534364 Score = 116 bits (128), Expect = 1e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 43004 TTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTC 43063 |||| || | |||||||||||||| ||||| || ||| ||||| |||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 43064 TTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGT 43123 | || |||||||| || || ||||||||||||||| || | || | ||||||||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 43124 TTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATA 43165 | ||| | || || || || || |||||||| | ||||||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 12953942 >seq7 Length=22540073 Score = 91.5 bits (100), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 42313 AACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGC 42371 || ||||||||||| || | ||||| ||||| ||||| || |||||| | | | || Sbjct 5748926 AAAAACCGTCTTTACATTAGATGGTTCGGTGTTTCGATGA-TCACTGTCTTATTGTCCGC 5748984 Query 42372 TACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCG 42431 || | | |||||| | || ||||| |||||||||| ||||| | |||||| ||||| Sbjct 5748985 AACTTCTTTATTTATTATTGCCTTCATAGCTGCCCCTCAAGTAGATACTGATGGTATTCG 5749044 Query 42432 TGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTG 42481 ||| |||| | ||| ||| | || | ||| ||||| ||||| |||| Sbjct 5749045 TGAGCCTGATTTTGGTTCTTTACTTTGTGG---AAACATTATCTCCGGTG 5749091 Score = 89.7 bits (98), Expect = 1e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42385 ATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCT 42444 ||| | || ||||| || ||| |||| |||| |||||||| |||| || ||||||||| Sbjct 5748005 ATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCT 5748064 Query 42445 GGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCA 42504 ||| | || ||||| ||||| || |||||||||||| | | |||| | || Sbjct 5748065 AATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCG 5748124 Query 42505 ATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAAT 42564 || ||| | || || || | || |||||||| | |||| || | ||| | |||| Sbjct 5748125 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAAT 5748184 Query 42565 GGCGGACCTTATCAGCT 42581 || | |||||| |||| Sbjct 5748185 GGTGATCCTTATAAGCT 5748201 >seq12 Length=17761961 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| |||| ||||| || |||||||| ||| | ||||||| ||| |||| | Sbjct 6069389 CTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTACATATTGATGTTATTTGTGAGC 6069448 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496 |||| ||| | ||| | || ||||| ||||| || |||||| || || | | |||| Sbjct 6069449 CTGTTTCTTGTTCTTTACTTTATGGAAACAATATTATCTCTAGTACCATTATTCCTATTT 6069508 Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCC 42537 | || || ||| | || || || |||||||||||| Sbjct 6069509 TTGCGGCGATCGGATTGCACTTTTAGCTAATCTGGGAAGCC 6069549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532779546576