Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 3e-16 seq12 80.6 8e-11 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 3e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26563 AATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGAT 26622 ||| || | ||| || | |||||| ||||| |||| || | | |||||||||| || Sbjct 5748205 AATTAGCTTATAAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAAT 5748146 Query 26623 CGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATT 26682 |||||||| || | |||||| || ||| | || | | || || || || ||||| Sbjct 5748145 TGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATT 5748086 Query 26683 GTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGG 26742 |||||| || | ||| || || || ||||| | || ||||| ||||||| || | Sbjct 5748085 GTTTCCATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGAGT 5748026 Query 26743 TGCTGCGATGAAGGCAA 26759 |||||||||||||||| Sbjct 5748025 GGCTGCGATGAAGGCAA 5748009 >seq12 Length=17761961 Score = 80.6 bits (88), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 26612 GCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCT 26671 ||||||||||| | ||||| || | |||||| || | | | ||| | || | || Sbjct 6069548 GCTTCCCAGATTAGCTAAAAGTGCAATCCGATCGCCGCAAAA-ATAGGAATAATGGTACT 6069490 Query 26672 -GATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTAT 26730 || || ||||||||||| || | ||| || | ||||| ||||||| || |||| || Sbjct 6069489 AGAGATAATATTGTTTCCATAAAGTAAAGAACAAGAAACAGGCTCACAAATAACATCAAT 6069430 Query 26731 ATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 || ||| || || |||||||||||||| | ||||| Sbjct 6069429 ATGTACTGGAGGGGCTGCGATGAAGGCGATAATAAA 6069394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711978951040