Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 >seq7 Length=22540073 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 155061 CTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGT 155120 || |||| | |||||||| || || |||| |||| ||||||||||||| || || || Sbjct 5748001 CTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGT 5748060 Query 155121 CGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAA 155180 | || ||||||| | ||||| ||||| || ||||||||||| || | |||| ||| Sbjct 5748061 CTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGC 5748120 Query 155181 CGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTA 155240 || || || | ||||| || || ||||||||||| ||| || ||||||||| | | | Sbjct 5748121 GGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATG 5748180 Query 155241 CAATGGTGGTCCTT 155254 |||||||| ||||| Sbjct 5748181 CAATGGTGATCCTT 5748194 Score = 111 bits (122), Expect = 2e-19 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||||||||| || || ||||| ||||| |||||||||||||| || || || Sbjct 5747417 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTT 5747476 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 ||||||||||| | ||||| || ||||||| || | || ||| ||| Sbjct 5747477 TCTGGTTCTTTACTTTATGGAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCA 5747530 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 |||| | | ||||| || || | ||||| || ||| || ||||| || ||| ||| Sbjct 5747531 TCAATCAGATTGCACTTTTACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATAC 5747590 Query 155242 AATGGTGGTCCTT 155254 ||||||||||||| Sbjct 5747591 AATGGTGGTCCTT 5747603 Score = 100 bits (110), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCC 155073 |||||||||||| |||||| || | | | | || || | | || ||| | ||| Sbjct 5748947 TGGTTCGGTGTTTCGATGATCACTGTCTTATTGTCCGCAACTTCTTTATTTATTATTGCC 5749006 Query 155074 TTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTA 155133 ||||| ||||| |||| ||||| | ||||||||||||||| || | |||||||||| Sbjct 5749007 TTCATAGCTGCCCCTCAAGTAGATACTGATGGTATTCGTGAGCCTGATTTTGGTTCTTTA 5749066 Query 155134 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTC 155193 | | ||| ||||| ||||| |||| || | |||| || ||||| | | Sbjct 5749067 CTTTGTGG---AAACATTATCTCCGGTGTCATTATTCCTACTTTTGCGGCAATCAGATTG 5749123 Query 155194 CACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTT 155237 ||||| |||| | ||||||||| ||| || || |||||| ||| Sbjct 5749124 CACTTTCATCCAACTTGGGAAGCTGCATCTATTAATGAGTAGTT 5749167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835112274720