Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq7 104 7e-18 seq12 95.1 3e-15 >seq7 Length=22540073 Score = 104 bits (114), Expect = 7e-18 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 41204 TAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGT 41263 ||||||| | | ||||| || | ||| || | || ||| ||||| |||| || | | Sbjct 5748220 TAAAAAGAGTAGAACAATTAGCTTATAAGGATCACCATTGCATAGCTACTCATCAACAGA 5748161 Query 41264 GCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGC 41323 | |||||||| |||||||| || || | |||||| || ||| | |||| | || Sbjct 5748160 TGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGC 5748101 Query 41324 TCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATC 41383 ||||| ||||||||||| || || | ||| || || || ||||| | || ||||| Sbjct 5748100 ACCAGAGATAATATTGTTTCCATAAAGTAAAGAATTAGAGACAGGCTCGTGAATACCATC 5748041 Query 41384 TATATCTACAGGCGGTGCTGCGATAAAGGCGATTATG 41420 ||||||| || | |||||||| ||||| || ||| Sbjct 5748040 AATATCTATTGGAGTGGCTGCGATGAAGGCAATAATG 5748004 >seq12 Length=17761961 Score = 95.1 bits (104), Expect = 3e-15 Identities = 161/235 (69%), Gaps = 19/235 (8%) Strand=Plus/Minus Query 41266 CGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTC 41325 |||||||||||||| | || || || | |||||| || | | | |||| | | | Sbjct 6069550 CGGCTTCCCAGATTAGCTAAAAGTGCAATCCGATCGCCGCAAAAATAGGAATAATGGTAC 6069491 Query 41326 CAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTA 41385 ||| ||||||||||| || || | ||| || | ||||| ||||||| || |||| | Sbjct 6069490 TAGAGATAATATTGTTTCCATAAAGTAAAGAACAAGAAACAGGCTCACAAATAACATCAA 6069431 Query 41386 TATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATG 41445 ||| ||| || || |||||||| |||||||| || ||| | ||| Sbjct 6069430 TATGTACTGGAGGGGCTGCGATGAAGGCGATAAT-AAATA--------CAG--------- 6069389 Query 41446 CTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGT 41500 || ||||| | ||||| ||||| || | ||| || ||||| ||||||||||| Sbjct 6069388 -AGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGT 6069335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702379522408