Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq8 165 9e-36 seq9 131 2e-25 seq7 116 4e-21 seq5 113 5e-20 seq12 102 9e-17 >seq8 Length=20165712 Score = 165 bits (182), Expect = 9e-36 Identities = 154/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || |||||||| || | Sbjct 4128823 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCT 4128764 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| || || || ||||| || || ||||||| Sbjct 4128763 GATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 4128704 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| ||||||||||| |||| Sbjct 4128703 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCAC 4128644 Query 66766 GAAGGTTGAGAGCAAG 66781 | ||||| ||||| || Sbjct 4128643 GTAGGTTCAGAGCCAG 4128628 >seq9 Length=15534364 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 67948 CTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACA 68007 ||||||| | ||| |||||||| ||||| || || |||||||| ||||| || |||| | Sbjct 12953943 CTATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATA 12953884 Query 68008 CCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAA 68067 || | ||||||||||| || || || |||||||| ||||| | ||||||||| | ||| Sbjct 12953883 CCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAA 12953824 Query 68068 CGGGAGTTGTTGAACGATGCATACTGGAAGAT 68099 || |||||||| || ||||| |||||||| Sbjct 12953823 CGAGAGTTGTTAAAACTAGCATATTGGAAGAT 12953792 >seq7 Length=22540073 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGT 68599 ||||| |||||||| | | | ||||||||| | ||| ||||||||||| || ||||||| Sbjct 5748194 AAGGATCACCATTGCATAGCTACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGT 5748135 Query 68600 GAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACA 68659 | | || || || ||| |||||| || |||||||| || || ||||| ||||| | Sbjct 5748134 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 5748075 Query 68660 GAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGA 68719 | | ||| || ||||| || |||||||||| || || | || | || ||||||| Sbjct 5748074 GTAAAGAATTAGAGACAGGCTCGTGAATACCATCAATATCTATTGGAGTGGCTGCGATGA 5748015 Query 68720 AGGC 68723 |||| Sbjct 5748014 AGGC 5748011 Score = 113 bits (124), Expect = 5e-20 Identities = 166/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGT 68599 |||||||||||||||| ||| || ||||| | ||| || ||||| | || ||||||| Sbjct 5747603 AAGGACCACCATTGTATAACTACCGATCAACAGATGCAGCCTCCCATTTTGGGTAAAAGT 5747544 Query 68600 GAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACA 68659 | | | |||| ||| |||| || | || ||| ||| || ||||| | Sbjct 5747543 GCAATCTGATTGATGCAGAAGCAGGATTAATGGAACTAGAGATG------TTTCCATAAA 5747490 Query 68660 GAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGA 68719 | | ||||||| |||||| || ||||||||||| || || || || || || ||||||| Sbjct 5747489 GTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGA 5747430 Query 68720 AGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCA 68767 |||||| || || ||||| ||||| | ||| || ||||||||||||| Sbjct 5747429 AGGCGATAATAAATACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCA 5747382 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/244 (70%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 68557 AACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTT 68616 ||| |||||| || | ||| ||||||||| | |||| |||||| | | ||||| Sbjct 5749167 AACTACTCATTAATAGATGCAGCTTCCCAAGTTGGATGAAAGTGCAATCTGATTGCCGCA 5749108 Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676 || |||||| || |||| || || ||||| ||| | || | |||||| | || Sbjct 5749107 AAAGTAGGAATAATGACACCGGAGATAATGTTT---CCACAAAGTAAAGAACCAAAATCA 5749051 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 || |||||||||||||| | || || | || ||||| |||||||| | || || | | Sbjct 5749050 GGCTCACGAATACCATCAGTATCTACTTGAGGGGCAGCTATGAAGGCAATAATAAATAAA 5748991 Query 68736 GATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGC 68794 || ||||| | ||| || || ||||||| || |||||||| | || |||||| | Sbjct 5748990 GA-AGTTGCGGACAATAAG-ACAGTGATCATCGAAACACCGAACCATCTAATGTAAAGAC 5748933 Query 68795 GGTT 68798 |||| Sbjct 5748932 GGTT 5748929 >seq5 Length=20807039 Score = 113 bits (124), Expect = 5e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 ||||| || ||| | ||||| || || || || | |||||||| || | ||||| || Sbjct 7586156 TCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAAAGCC 7586097 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 | || | | || || || |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 7586096 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 7586037 Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAA 67130 ||||| | |||||| | ||||||||| || |||| || || ||| Sbjct 7586036 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAA 7585992 >seq12 Length=17761961 Score = 102 bits (112), Expect = 9e-17 Identities = 174/254 (69%), Gaps = 19/254 (7%) Strand=Plus/Minus Query 68572 GTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACA 68631 ||||| |||||||| || | |||||||| | || || || || |||||| || Sbjct 6069554 GTTGCGGCTTCCCAGATTAGCTAAAAGTGCAATCCGATCGCCGCAAAAATAGGAATAATG 6069495 Query 68632 GCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCA 68691 | || ||| || || ||||| ||||| || | |||| || |||||| |||| |||| || Sbjct 6069494 GTACTAGAGATAATATTGTTTCCATAAAGTAAAGAACAAGAAACAGGCTCACAAATAACA 6069435 Query 68692 TCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGTTGCTGCAAGC 68751 || || | || || || || ||||||||||||| || ||| | | Sbjct 6069434 TCAATATGTACTGGAGGGGCTGCGATGAAGGCGATAAT-AAATA---------------C 6069391 Query 68752 AGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTC 68811 || ||||||||||| || |||||||| || | |||||| ||||| || ||| ||| Sbjct 6069390 AG---AGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTT 6069334 Query 68812 ACCCATTCGCAGAA 68825 | || | |||||| Sbjct 6069333 ATCCTATTGCAGAA 6069320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572054314191840