Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 138 3e-27 seq12 122 3e-22 seq6 100 8e-16 seq5 84.2 6e-11 >seq8 Length=20165712 Score = 138 bits (152), Expect = 3e-27 Identities = 239/342 (70%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2650165 ATTTCTTACAGTGCCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2650224 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 2650225 CTGGATATATCCAGTCTCAGAGGTCTTAACAGCAGTATCAATCAGACCTTCTCTACCACC 2650284 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGA 302716 |||||| || ||||| | |||| ||| ||| || || | || | ||| |||| || | Sbjct 2650285 CATAGCGTGAAAGAAAAATTCTTGCGG-CGTCAGACCTCTAAGGTAAGAGTTCTCCACAA 2650343 Query 302717 AACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CA 302775 | ||||| || || || ||| || || ||||| |||| || | | ||| || Sbjct 2650344 ATCCACGACTTTCAGGACCATAGTCATCTTTTGTGAAGTGGGGCAATGTTC-GATCTACA 2650402 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| | || || ||||| || || || ||||||||||| | || | |||| || Sbjct 2650403 AAGCCAAACGGTATCCGCTTGCCCTCCACATTCTGCTGTCCGACACAAGCCGTCATTTGT 2650462 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | |||||| || ||||| ||| | |||||| Sbjct 2650463 GAAATATTGATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 2650504 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/138 (75%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| |||| || || ||||| |||||||||| | |||||||||||||| Sbjct 2649439 GGGAACACCAAGGGTGACATT---CTTGGCACTAACACCAGCATAATGGAAAGTATTCAG 2649495 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA-CCAACCATTTCTC 301948 || | ||||| | ||| || ||||| ||||| |||| || | |||| |||||| | Sbjct 2649496 GGTCATCTGAGTTGCTGGTTCTCCAATGGACTGTGCAGCAA-CACACCCAATCATTTCAC 2649554 Query 301949 CTGGTGCTACAATAGACT 301966 |||| || || | ||||| Sbjct 2649555 CTGGGGCCACCAAAGACT 2649572 >seq12 Length=17761961 Score = 122 bits (134), Expect = 3e-22 Identities = 225/330 (68%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | || || |||||||| ||| | | || || Sbjct 406419 ATTTCTTACAGTACCATCATACTTCACTATGATATCTTCCATGGCCTTCACAAGTCGTCG 406478 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || || || |||||||| ||||| | | |||||| Sbjct 406479 CTGGATATATCCAGTCTCAGAGGTCTTCACTGCAGTATCAATCAGACCTTCTCTACCACC 406538 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| | || | || | | ||| |||| ||||| Sbjct 406539 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAAGCCTCGAAGATAAGAGTTCTCCACGAA 406598 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || ||||| |||| || | | | | Sbjct 406599 CCCACGACTTTCCGGGCCATAGTCATCTTTTGTGAAGTGGGGCAATGTTCGATCGACGAA 406658 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| ||||||| ||||| || ||||| ||||| ||||| | || | | |||| || || Sbjct 406659 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGTTGTCCGACACAAGCAGTCATTTGTGA 406718 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGC 302867 |||||| | | |||| || ||||| || Sbjct 406719 AATATTGATGAAAGTGCCTTTTGAGCCTGC 406748 >seq6 Length=21016138 Score = 100 bits (110), Expect = 8e-16 Identities = 88/109 (81%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||||| || |||||||| ||||||||| ||||| || ||||| | |||||| ||| Sbjct 2855138 AACCTACCCTTTCTCTTGCCTCCACCCTGATCAACATAACGGGCAGTATCATTGAACACA 2855197 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | ||||||||||| ||| || ||||| || ||||| ||||| || |||| Sbjct 2855198 CGTAGCATAGGAACAATCCCGTTGGAGGTTCCATTTGTTCCTCGGATAT 2855246 Score = 95.1 bits (104), Expect = 4e-14 Identities = 315/474 (66%), Gaps = 22/474 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || || ||||||| |||| |||| | | ||| || Sbjct 18387651 ATATCAGCCCTGTTGGTGGCAGC---TATAACAATA-ATTCCAGTGTTTCCCTCAAAACC 18387706 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||| ||| ||| | | Sbjct 18387707 ATCCATCTCAGTAAGTAACTGATTCAAAGTCTGCTCCCTTTCATCGTTTCCACCACC--A 18387764 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || ||| || || ||||||||||| ||||| |||| || | | || Sbjct 18387765 AT-ACCTG--TCCCTCTTTGCCTT-CCAACAGCATCGATTTCATCAACAAATACAATGCA 18387820 Query 289065 CGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 |||| ||| | | || | || ||| | || | || ||||| || |||| || Sbjct 18387821 AGGAGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGGGAGGCACCAACTCCC 18387878 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| |||| || ||||| ||||| | |||| | || | || | ||| ||||| || Sbjct 18387879 ACAAACATCTCCACAAACTCAGATCCTGATA-TCGAGAAAAACGGCACACCAGCTTCTCC 18387937 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 ||| | ||| | || || | |||||||| ||||||||||| || | | ||||| || Sbjct 18387938 TGCAATAGCCTTGGCAAGCAAGGTCTTACCAGTTCCAGGTGGACCAACAAGCAGAACACC 18387997 Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 ||| || | || ||| ||| | | | || || |||| || || || || | Sbjct 18387998 CTTAGGGATACGAGCACCAACAGCAGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCAC 18388057 Query 289302 TTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 |||| | || | |||||| ||||| ||| || || || ||| |||| |||| Sbjct 18388058 TTCCATGAAATCTTGTTTTGCTTCATCGACA-CCAGCAACGTCATCAAACGTAA 18388110 >seq5 Length=20807039 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 13167345 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 13167404 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 13167405 GGGACCATTTTTTT 13167418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817373708044