Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq2 98.7 8e-16 >seq5 Length=20807039 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || || || |||||||||||||| | || ||| | Sbjct 6507426 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACGCTAGAGGTTGAGTCGTCA 6507367 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| || || || ||| | ||| ||| ||| Sbjct 6507366 GACACGATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 6507307 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||| || |||||| Sbjct 6507306 CAGCGCCTCATATTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCAGATTACAAC 6507247 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 6507246 ATCCAGAAGGAGTCCACCTTGCATCTGGTG 6507217 >seq2 Length=26406337 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| |||| |||| || | Sbjct 2677246 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 2677187 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| || ||| Sbjct 2677186 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 2677127 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||||| || || | || ||||||||| Sbjct 2677126 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAAC 2677067 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 2677066 ATCCAGAAGGAGTCGAC 2677050 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || ||| | || ||||| ||||| ||| | || |||| || | Sbjct 2677018 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 2676959 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2676958 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2676899 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| || || | || ||||||||| Sbjct 2676898 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTCGCTGACTACAAC 2676839 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 2676838 ATCCAGAAGGAGTCGAC 2676822 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| || ||||||||||| |||| ||| |||| || Sbjct 20340571 GATCAGCAGAGGCTAATATTTGCTGGGAAACAGCTGGAAGACGGGCGCACATTGGCTGAT 20340512 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| ||||||||||| | ||| |||| Sbjct 20340511 TACAACATTCAGAAGGAGTCTACTCTTCACTTGGT 20340477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876741664268