Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 136 3e-27 seq2 113 3e-20 seq4 109 4e-19 seq6 104 2e-17 >seq5 Length=20807039 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | || || || | || || ||||| ||||| |||||||| ||||| || Sbjct 6507883 TCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGC 6507942 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || ||||| ||||| ||| | || | | ||||| || || || Sbjct 6507943 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGG 6508002 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || ||| || | ||||||| | || | || ||||| ||| | Sbjct 6508003 AATACCCTCCTTGTCCTG-AATCTTGGCTTTGACATTGTCGATTGTATCAGAGGATTCAA 6508061 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| || |||||||| | || || ||||| |||||||| Sbjct 6508062 CCTCAAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 6508110 Score = 116 bits (128), Expect = 3e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||| | ||| || || | |||||||||||| || || || ||||| || || ||| Sbjct 16643737 CCTCCCCGGAGACGGAGGACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCA 16643678 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||| || ||||| ||| | || | | ||||| ||||| || Sbjct 16643677 AGAGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGG 16643618 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || |||||| | || | ||||| || || || Sbjct 16643617 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACC 16643558 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAA-AACGTA 29797 || || ||||| || |||||||| | || || ||||| |||||||| | ||| |||||| Sbjct 16643557 TCGAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCATCTATAAGAACGTA 16643498 Query 29798 T 29798 | Sbjct 16643497 T 16643497 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| || || |||||||| ||||||||||| || || |||| |||||| || Sbjct 6507443 AGCACCAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCC 6507502 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || ||||| ||| | || | | ||||| || || ||||| || || ||||| Sbjct 6507503 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC 6507562 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || || | || | ||||| || || || ||||| || || || Sbjct 6507563 TG-AATCTTCGCCTTCACGTTATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGT 6507621 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| || ||||| |||||||| Sbjct 6507622 CTTGCCTGTCAGGGTCTTGACAAAAATCTGCAT 6507654 >seq2 Length=26406337 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||| ||||||||||| || || || || || ||||| || || || Sbjct 20340687 CCTCCACGGAGACGCAGAACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 20340746 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || |||||| | || | || |||||||| || || Sbjct 20340747 AACGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGG 20340806 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||||| | || | || ||||| ||| || Sbjct 20340807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTATCAGAGCTTTCAACC 20340866 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | ||| || ||||| |||||||| Sbjct 20340867 TCAAGTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 20340913 >seq4 Length=23326293 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || |||||||| || ||||||||||| || ||| |||||| | Sbjct 20244966 CGCAGGACAAGGTGCAGGGTGGATTCCTTCTGAATGTTATAGTC--CAAGGGTGCGGCCA 20244909 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||||||| | || | ||||| ||||| || || ||||| ||| Sbjct 20244908 TCCTCGAGCTGCTTGCCAGCAAAGATAAGGTGCTGCTGGTCCGGAGGGATGCCCTCCTTG 20244849 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || ||| | || | ||||| || ||||| || | || || Sbjct 20244848 TCCTG-AATCTTAGCCTTCACATTGTCAATCGTGTCGGAGGACTCTACCTCCAAGGTGAT 20244790 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| ||||| || |||||||| Sbjct 20244789 GGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCAT 20244754 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || |||||||| || ||||||||||| |||| ||||||| ||| || || || Sbjct 20245182 TGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTGCGACCATCCTCAAGCTGC 20245123 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | || | | |||||||| || || || ||||| || || || | || Sbjct 20245122 TTGCCAGCGAAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGGATCTTG 20245063 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | || ||||| || || || | || || || |||||||| Sbjct 20245062 GCCTTCACATTGTCAATTGTATCAGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTA 20245003 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| ||||||||| Sbjct 20245002 AGAGTCTTCACAAAGATCTGCATT 20244979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || ||||| || ||||||||||| || |||| ||||| ||| || || || Sbjct 20245410 TGCAGAGTAGATTCCTTCTGAATGTTATAGTCAGCAAGAGTGCGGCCATCCTCCAGCTGC 20245351 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | || | | ||||| || || |||||||| || ||||| || | || Sbjct 20245350 TTGCCAGCAAAGATAAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATCTTG 20245291 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || | | || | |||||||| || || || | || || || |||||||| Sbjct 20245290 GCCTTCATGTTGTCAATTGTGTCAGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTG 20245231 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 20245230 AGGGTCTTCACGAAGATCTGCAT 20245208 >seq6 Length=21016138 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| || ||||| ||||| || Sbjct 17541148 TCCACCCCTGAGCCTCAGAACCAAATGGAGCGTTGACTCTTTCTGGATGTTGTAATCAGC 17541089 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || | ||| || |||||| | || | ||||||||||| || || Sbjct 17541088 TAATGTGCGTCCATCTTCCAATTGCTTCCCAGCAAAAATTAGCCTTTGCTGATCTGGGGG 17541029 Query 29679 AATACCCTCTTTGTCTTGTAAT 29700 |||||||||||||| || ||| Sbjct 17541028 GATACCCTCTTTGTCCTGAAAT 17541007 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || || ||||||||||| |||| ||||||| | Sbjct 18552741 CGGAGCACGAGGTGTAGGGTGGACTCCTTCTGGATGTTATAATCTGCAAGGGTGCGACCA 18552800 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || | |||| | ||||| | ||||||||| | ||||| || || ||| Sbjct 18552801 TCCTCAAGCTGCTTTCGAGCAAAGATCAAACGCTGCTGATCCAGTGGAATGCCTTCCTTG 18552860 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA------AAGTTCTACT--TCAA 29743 || || | || |||||| | || | || || || || || ||| |||| Sbjct 18552861 TCCTGGATCTTGGCCTTGACATTGTCAATTGTATCTGAGGACTCAACCTCAACTCCTCAA 18552920 Query 29744 GAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || || | || || ||||| |||||||| Sbjct 18552921 GGGTGATGGTTTTCCCGGTGAGAGTCTTCACAAAAATCTGCAT 18552963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692