Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq8 127 2e-24 seq5 107 2e-18 seq9 98.7 1e-15 >seq7 Length=22540073 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 157137 TATCTGCTTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGA 157196 || || || |||| |||| ||| | ||||| |||| | ||||| || ||||||| ||| Sbjct 5747995 TAGCTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGA 5748054 Query 157197 ACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTC 157256 || || || |||| | | ||||| ||||| || ||||||||||| || ||||| | Sbjct 5748055 GCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 5748114 Query 157257 TTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTG 157316 ||| || ||||| | ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 5748115 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTA 5748174 Query 157317 GCTTTACAACGGTGGTCCTT 157336 ||| | ||| |||| ||||| Sbjct 5748175 GCTATGCAATGGTGATCCTT 5748194 Score = 107 bits (118), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 157103 GTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTA 157161 |||| | ||||| || || || | | |||||| |||| || ||| | || ||| | Sbjct 5747376 GTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATC 5747434 Query 157162 GCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTAT 157221 ||||| ||||| || ||||| || ||||||||||| || ||| |||||||| | | ||| Sbjct 5747435 GCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTAT 5747494 Query 157222 GGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTC 157281 || || ||||||| || | || |||| |||| ||||| | | ||||| Sbjct 5747495 GGAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTTT 5747548 Query 157282 TACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTT 157336 ||||| | ||||| || ||||| ||||| || | | ||||| |||||||||| Sbjct 5747549 TACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTT 5747603 >seq8 Length=20165712 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 159597 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGAT 159656 || ||||| || || ||||| || || || || || || ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 159657 CCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGG 159716 || |||||||| || ||||||||||| || |||||| | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 159717 TTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGA 159776 ||||| || ||||| || |||||||| | || ||||| || || ||||||||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 159777 GGTAACGC 159784 || ||||| Sbjct 4128808 GGAAACGC 4128815 >seq5 Length=20807039 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 159249 TTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACA 159308 ||||| || || || ||||| | ||| | |||||| | ||||| || || |||||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 159309 CTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCT 159368 | ||||| || ||||||||||||||||| || | |||| | || | |||| ||| Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 159369 ATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTT 159427 |||||||||| || || ||||| || ||| ||||| || || ||||| ||||| Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 >seq9 Length=15534364 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 157777 ATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGG 157836 ||||||||||| ||| || |||||| | | | ||||||||| | || || ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 157837 CCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAAC 157896 ||||| || || || ||||||||||| | || | || || ||||| |||||||| ||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 157897 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 157940 || ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953912 GGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545273518208960