Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq8 123 3e-23 seq9 111 2e-19 seq5 98.7 1e-15 seq3 93.3 5e-14 seq7 82.4 9e-11 >seq8 Length=20165712 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 179761 CTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGAT 179820 || ||||| || || ||||| ||||| ||||| || || ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 179821 CCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGG 179880 ||||| || ||||| ||||| || || || |||||| | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 179881 TTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGT 179940 ||||| || ||||| || |||||||| | || ||||| || || || ||||| || Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 179941 GGTAACGCACT 179951 || ||||| || Sbjct 4128808 GGAAACGCTCT 4128818 >seq9 Length=15534364 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 178334 || || || |||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTT 178394 || || ||||||||||| || || |||||||| || | ||| | || ||||| || Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 178395 AACCTCAATGGATTCAACTTCAACCAGTC 178423 ||||| || |||||||| |||||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq5 Length=20807039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 ||||| || || ||||| ||| ||||| | || ||||| ||||| || || || ||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 179473 CTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCT 179532 | ||||| ||||| |||||||||||||| || | | || | ||| |||| | ||| Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 179533 ATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGA 179576 |||||||| | ||| || || || || | | ||| || || || Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 >seq3 Length=29602667 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||| ||||||||||| || ||| |||| || |||||||| || |||||||| Sbjct 28695881 TACATCCTCGATGCTGCTGAGACCGCTGGTGTTGAGCTGCCCTACTCGTGCCGTGCTGGA 28695940 Query 138598 GCATGTTCTACCTGTGCTGGTAA-ATTAGTTGA-AGGAACTGTAGATCAGTCTGACCAGT 138655 ||||| ||||||||||| || || |||| || || | || || ||||| || | Sbjct 28695941 GCATGCTCTACCTGTGCCGGCAAGATTA--AGACTGGCAAGGTCGACCAGTCGGATGGAT 28695998 Query 138656 CTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCA 138715 | |||||||| |||| || | || || | | | |||| ||||| | ||||||| Sbjct 28695999 CATTCCTTGACGATGCGCAGCAGGAAGACGGCTATGTGCTGACATGCGTCTCCTACCCCA 28696058 Query 138716 CATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 ||| || || | || | ||| | || || | || || |||||| Sbjct 28696059 AATCGGACTGCGTCATCCATACTCACAAGGAAGGAGACCTTTACTGA 28696105 >seq7 Length=22540073 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177644 TATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 || || || ||| | |||||| |||| || | || | || || || || || | || Sbjct 5747995 TAGCTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGA 5748054 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 || ||| || ||| | | ||||| ||||| || ||||||||||| || | || | Sbjct 5748055 GCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 5748114 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 ||| || || || | ||||| || || || |||||||| ||||| ||||||||| Sbjct 5748115 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTA 5748174 Query 177824 GCTGTATAACGGTGGTCCTT 177843 ||| | || |||| ||||| Sbjct 5748175 GCTATGCAATGGTGATCCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605667109149920