Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11 161 7e-34 seq12 114 1e-19 seq9 93.3 3e-13 seq8 86.0 5e-11 >seq11 Length=21046960 Score = 161 bits (178), Expect = 7e-34 Identities = 683/1064 (64%), Gaps = 26/1064 (2%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||| || || |||||||||||||| | ||||| || ||||||||| || Sbjct 14354071 GCAGACACGTTCAGGATACCATTGGCATCAATGTCAAAGCACACAGTAATTTGAGGAACA 14354012 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || ||||||| ||||| || | | ||| | ||||| || || || Sbjct 14354011 CCCCTGGGAGCAGGAGGGATGCCAGATAGCTCAAACTTGCCCAGCAGGTTGTTGTCACGG 14353952 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | |||||||| ||| |||||| || ||| || || || || || Sbjct 14353951 GTCCTGGTCCTCTCACCCTCATAAACCTGGATAAGGACACCAGGCTGGTTGTCAGAGTAG 14353892 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATAT 281660 || | || || ||| || || || || || ||||| || ||||| | Sbjct 14353891 GTGGAGAAGAC-CTGCTCCTTCTTGGTGGGGATGGTGGTGTTCCTCGGGATCAAGACA-- 14353835 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 ||||| | ||||||||| || || ||||| |||||||| ||||||||||| | |||| Sbjct 14353834 --GTCATGACACCACCAGCAGTCTCCAAACCGAGAGAAAGTGGAGTGACATCCAACAGGA 14353777 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || |||| || |||| || || || || || | |||||| | Sbjct 14353776 GGAGATCCTGGACCTTCTCATTGCCTTCACCACTCAGGATGGCAGCCTGGACAGCAGCTC 14353717 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 |||| |||||||| ||||| || || | | | || | || ||||| || || | Sbjct 14353716 CATAAGCAACAGCCTCATCTGGGTTGATGTTCTTGCAAAGCTCCTTGCCATTAAAGAAGT 14353657 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| || || ||| | || || | || || || ||||| | |||| |||| Sbjct 14353656 CCTGAAGGAGCTGCTGCACCCTTGGGATCCTAGTGGAGCCACCAACAAGGACAACATCAT 14353597 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGACC 281958 | || ||| | || |||| |||| |||| | |||| | || || | || | | Sbjct 14353596 GAACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCAC 14353538 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 | || || | || || || || || | || | || | || | || | Sbjct 14353537 TTC-CTGAAGAGATCCATGTTGAGCTCCTCAAACCTGGCACGGGTGATGGTCG-AGTAGA 14353480 Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | ||||| || || ||| ||||||| ||||| ||||| |||| | || || || | Sbjct 14353479 AGTCAATGCCCTCATACAGTGAATCAATCTCAATGGTAGTCTGAGCAGTGGAGGAGAGAG 14353420 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATT 282135 | || || | ||||| || ||||| || || | | || | | | ||| | | Sbjct 14353419 TCCTCTTCGCCCTCTCACAAGCCGTCCTCAGCCTCCTGAGAGCCCTGG--GGTTGCCAGT 14353362 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 | ||| | |||| ||| ||||| || |||| ||| | | || | ||| || || Sbjct 14353361 GATATCCTTCTTATTTTTCCTCTTAAATTCTTGCACAAAGTGGTTAACCATACGGTTGTC 14353302 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 |||||||||||| || | | ||| | || | || || | || | || | || || Sbjct 14353301 AAAATCTTCACCACCAAGGTGAGTGTCACCAGCTGTCGCCTTGACCTCAAAGATACCCTC 14353242 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | || | |||||| ||| ||||| || | ||||| || || || || Sbjct 14353241 CTCAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTT 14353182 Query 282316 CATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | || | | ||| || || ||||||||||| |||| ||| ||||||||||| Sbjct 14353181 CTTCTCACCGACGCTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCTGCAGCAGTTGG 14353122 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| || || | || ||||||||||||||||| ||| ||||| || || || || Sbjct 14353121 CTCATTGATGATACGCATGACATTAAGACCAGCAATCACTCCAGCATCCTTGGTAGCCTG 14353062 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || ||||||||||| | ||| |||| Sbjct 14353061 CCTCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACTGCAT 14353018 Score = 138 bits (152), Expect = 8e-27 Identities = 533/827 (64%), Gaps = 24/827 (3%) Strand=Plus/Minus Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||| | |||||||| ||||| ||||||||||| || || || ||||| | |||| Sbjct 20824577 GGTCATGACTCCACCAGCAGTTTCCAAACCAAGAGAGAGTGGGGTAACATCCAACAGGAG 20824518 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | |||| || || || ||||| | |||||| || Sbjct 20824517 GAGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAGGATGGCAGCTTGGACAGCAGCTCC 20824458 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 ||| |||||||| ||||| || || | | | || | || |||||||| || | Sbjct 20824457 ATAAGCAACAGCCTCATCTGGGTTGATGTTCTTGCACAGCTCCTTGCCATTGAAGAAGTC 20824398 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||| || || ||| | || || | || || || ||||| | |||| ||||| Sbjct 20824397 CTGAAGGAGCTGCTGCACCCTCGGGATCCTAGTGGAGCCACCAACAAGAACAACATCATG 20824338 Query 281902 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 || ||| | || |||| || | |||| | || ||||| || || | || Sbjct 20824337 AACA-GTGCTCTTGTCCATCTTAGCATCCCTGAGGCACTTCTCAACAGGCTCCATACACT 20824279 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 || || | || || || || || | || | || | || | ||| Sbjct 20824278 TCCTGAAGAGATCCATGTTGAGCTCCTCAAACCTGGCACGGGTGATGGTTGAGTAGAAAT 20824219 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTG 282077 |||| || || ||| ||||||| ||||| || || || ||| || || || ||| Sbjct 20824218 CAATGCCCTCATACAGGGAATCAATCTCAATGGTGGTCTGGGCAGTGGAGGA-GAGAGTC 20824160 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT----TTGCTGATTG 282132 | | || || | ||||| |||||||| | || | | || | | |||| | | | Sbjct 20824159 CTC--TTCGCCCTCTCACAAGCTGTCCTCAACCTCCTGAGAGCCCTGGGGTTGCCGGT-G 20824103 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 || ||| | || | ||||||||||| |||| ||| | | || | ||| || Sbjct 20824102 AT----ATCCTTCTTGTTCTTTCTCTTGAATTCTTGTACAAAGTGGTTAACCATACGGTT 20824047 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||||||||||| || | | ||| | || | || || | || | || | || Sbjct 20824046 GTCAAAATCTTCACCACCAAGGTGAGTGTCACCAGCTGTCGCCTTGACCTCAAAGATACC 20823987 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || |||| | | || | |||||| ||| ||||| || | ||||| || || || Sbjct 20823986 TTCCTCAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGAAC 20823927 Query 282313 ATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 |||| | || | ||| || || |||||||||||||||| ||| |||||||| Sbjct 20823926 ATTCTTCTCACCAACGCTGGTGGCCTTCTTGTCAAGACCATACGCAATAGCTGCAGCAGT 20823867 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||| || || || || | || ||||||||||||||||| ||| ||||| || ||||| Sbjct 20823866 TGGCTCGTTGATGATACGCATGACATTAAGACCAGCAATCACTCCAGCATCCTTGGTGGC 20823807 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || || ||||||||||| | || |||| Sbjct 20823806 CTGCCTCTGAGAGTCATTGAAGTAGGCAGGAACAGTGACGACTGCAT 20823760 Score = 86.0 bits (94), Expect = 5e-11 Identities = 142/205 (69%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT-- 282332 |||||| ||||||||||| | |||||| | || || || | |||||| |||| Sbjct 3839294 ACATCAAAAGTTCCACCACCAAGATCAAAGACGAGAACTATCCTCCCTTTGT--TGGTGA 3839237 Query 282333 ------TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 | || |||||||||||||| | ||||||||||| ||||| || || || | || Sbjct 3839236 CAGGCATATTCTCAAGACCATACGCGAGGGCAGCAGCAGTGGGTTCGTTGATGATGCGCA 3839177 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 || || || || ||||| ||||| ||| | ||||| || | || || | ||| | Sbjct 3839176 TGACGTTGAGGCCGGCAATGGCGCCTGCGTCTATGGTGGCCTGCCGCTGAGAGTTGTTGA 3839117 Query 282447 AATATGCAGGAACAGTAATAACGGC 282471 | || ||||||| || | ||||| Sbjct 3839116 AGTAGACAGGAACGGTGGTGACGGC 3839092 >seq12 Length=17761961 Score = 114 bits (126), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 ||||| |||||| ||| |||||||| | ||||| || || |||||| | || | Sbjct 14542677 AAGAGAGACATCAAAGGTACCACCACCAAGGTCAAAGATGAGGACATTCTTCTCACCAAC 14542618 Query 282328 T-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||| | || ||||||||||| |||| |||||||| ||||| ||||| || || Sbjct 14542617 ACTGGTAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGCTGTTGGCTCATTGATGAT 14542558 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | || ||||| || |||||||| ||| ||||| || || || || || ||||| || Sbjct 14542557 ACGCATGACATTGAGGCCAGCAATGACTCCGGCATCCTTGGTAGCCTGCCTCTGTGAGTC 14542498 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| || || ||||| || || | |||||| Sbjct 14542497 GTTGAAGTAAGCAGGCACTGTCACAACGGC 14542468 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||| || ||||| |||||||| ||||| |||| || | || |||||| Sbjct 12042862 CCATATGACAGAGCTGCGGCAGTGGGTTCATTGATAATCCTCATCACCTCTAGTCCAGCA 12042921 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| || || |||||| Sbjct 12042922 ATTCTACCAGCATCCTTGGTAGCCTGGCGCTGAGCATCATTGAAATAAGCTGGGACAGTA 12042981 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 ||||| || | | || ||| |||| ||||| ||| |||| ||||| || Sbjct 12042982 ATAACAGCCTTGGAGACAGTTTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTT 12043037 >seq8 Length=20165712 Score = 86.0 bits (94), Expect = 5e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| || ||| ||||| || ||||||||||| |||||||| |||||||| ||| | || | Sbjct 2652205 TGAAAGCTAAGGAAGGCCGCATTAGAGGAAACTTGATGGGGAAGCGTGTTGATTTCTCAG 2652146 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 | ||||| || || || | ||||| |||||| || ||||| | ||||| || Sbjct 2652145 CTCGTACTGTCATCACACCAGATCCAAATATTAACATCGATGAATTGGGTGTGCC 2652091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629810850712