Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq2 143 5e-29 seq5 140 6e-28 seq8 120 6e-22 seq6 113 9e-20 >seq4 Length=23326293 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || ||||||||||| || |||||||||| || | | ||| Sbjct 20245194 CGAAGGACAAGGTGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTGCGACCA 20245135 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || |||||||| || || || |||||| Sbjct 20245134 TCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTA 20245075 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| |||||| | || || ||||| || || Sbjct 20245074 TCCTGGATCTTGGCCTTCACATTGTCAATTGTATCAGAGGACTCAACCTCCAAGGTGATG 20245015 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || | ||||| ||||| ||||||||| Sbjct 20245014 GTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATT 20244979 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || || || | ||||||||||||||| ||||| || ||||| |||| Sbjct 20245436 TACCTCCACGAAGGCGGAGGACAAGGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCAG 20245377 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || ||||||||||| || | || || ||||| | Sbjct 20245376 CAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGTG 20245317 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || | || ||||| || ||| | || | Sbjct 20245316 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCATGTTGTCAATTGTGTCAGAGGACTCAA 20245257 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| || | ||||| || || |||||||| Sbjct 20245256 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 20245208 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||| ||||| || || ||||| || ||||| || | || | | || Sbjct 20245650 CGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGCCCA 20245591 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || || |||||||| Sbjct 20245590 TCCTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTG 20245531 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || || || || ||| | || || |||||||| || Sbjct 20245530 TCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAAACGACTCAACCTCCAAAGTGATG 20245471 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 20245470 GTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 20245436 Score = 120 bits (132), Expect = 6e-22 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || ||||| ||||| || ||||| || | | | | || Sbjct 20244966 CGCAGGACAAGGTGCAGGGTGGATTCCTTCTGAATGTTATAGTCCAAGGG--TGCGGCCA 20244909 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || || || || ||||| || || ||||| Sbjct 20244908 TCCTCGAGCTGCTTGCCAGCAAAGATAAGGTGCTGCTGGTCCGGAGGGATGCCCTCCTTG 20244849 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| |||||||| || | ||||| ||||| || || Sbjct 20244848 TCCTGAATCTTAGCCTTCACATTGTCAATCGTGTCGGAGGACTCTACCTCCAAGGTGATG 20244789 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 20244788 GTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCAT 20244754 >seq2 Length=26406337 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||||||| || || |||||||| || ||||| || || || |||| Sbjct 20340687 CCTCCACGGAGACGCAGAACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 20340746 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || || |||||||||||||| || || || ||||| ||||| Sbjct 20340747 AACGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGG 20340806 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || ||||| |||||| ||| || Sbjct 20340807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTATCAGAGCTTTCAACC 20340866 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || |||||||| ||||| | ||||| ||||| |||||||| Sbjct 20340867 TCAAGTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 20340913 Score = 131 bits (144), Expect = 3e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || ||||| ||||| ||||| ||||||| | | | ||| Sbjct 20340243 CGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTGCGCCCG 20340302 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || || || || || || || || || ||||| Sbjct 20340303 TCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTG 20340362 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || || ||||| || ||||| ||||| || || || | || || |||| |||||| Sbjct 20340363 TCCTGGATTTTTGCCTTAACATTGTCAATTGTGTC-GGAGCTCTCCACCTCCAGAGTTAT 20340421 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| ||||| |||||||| Sbjct 20340422 GGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 20340457 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || || ||||| || || || || || || | || | | || Sbjct 20340015 CGCAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCTAAGGTACGCCCA 20340074 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| || ||||||||||| || |||||||| ||||| || || || ||||| Sbjct 20340075 TCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTTTGTTGGTCTGGTGGGATGCCCTCCTTG 20340134 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| ||||| | || ||||| | || || Sbjct 20340135 TCCTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCGACTTCAAGTGTGATA 20340194 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | |||| ||||| ||||| |||||||| Sbjct 20340195 GTCTTTCTAGTCAGGGTCTTGACAAAGATCTGCAT 20340229 >seq5 Length=20807039 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || ||||||| ||| | || || Sbjct 16643953 CGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTGCCA 16643894 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || ||||| ||||| Sbjct 16643893 TCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTG 16643834 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||||||||| || ||||| ||||| |||||| || || || || | || || Sbjct 16643833 TCCTGAATCTTTGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATA 16643774 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| || || || ||||| Sbjct 16643773 GTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 16643739 Score = 113 bits (124), Expect = 9e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| ||||| ||||| || || || || || |||| || | | ||||| Sbjct 6507443 AGCACCAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCC 6507502 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || |||||||| || | || || ||||| || || |||||||| || Sbjct 6507503 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC 6507562 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || || || || || || || | || || || | || || ||| Sbjct 6507563 TGAATCTTCGCCTTCACGTTATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGTC 6507622 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||| ||||| |||||||| Sbjct 6507623 TTGCCTGTCAGGGTCTTGACAAAAATCTGCAT 6507654 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||| || || || ||||| || || ||||| | | | | || Sbjct 6507211 ACGGAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCC 6507270 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || |||||||| || || | || || || || || || || ||||| Sbjct 6507271 ATCCTCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 6507330 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||||||||| || || || |||||||| || | || || || | || || Sbjct 6507331 GTCCTGAATCTTTGCCTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAAT 6507390 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| ||||| || ||||| Sbjct 6507391 GGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 6507426 >seq8 Length=20165712 Score = 120 bits (132), Expect = 6e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| ||| || | | ||| || || | || ||||| || || ||||| ||||| || Sbjct 3967496 TCACAGACCACCACGGAGACGGAGGACAAGATGGAGAGTCGACTCCTTCTGAATATTGTA 3967555 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 |||| ||| | | || || || || || || || |||||||| || | || ||||| Sbjct 3967556 GTCAGCAAGAGTACGGCCTTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATC 3967615 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 ||||| || ||||||||||| |||||||| || || ||||| ||||| || || | Sbjct 3967616 AGGAGGGATCCCTTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATGGTGTCTGACGA 3967675 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || ||||||||||| || | ||||| || || |||| ||| Sbjct 3967676 CTCAACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTTCAT 3967729 >seq6 Length=21016138 Score = 113 bits (124), Expect = 9e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | ||| || ||||| || ||||| || || || |||| || | | ||||| Sbjct 18970216 AGAACCAGGTGGAGGGTAGACTCCTTCTGNATGTTGTAGTCAGCAAGGGTGCGGCCGTCC 18970157 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || |||||||| || | || || || || || || || ||||| || Sbjct 18970156 TCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 18970097 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| ||||| || || |||||||| || | || || || | || || ||| Sbjct 18970096 TGGATCTTGGCTTTAACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTC 18970037 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||| || || |||||||| Sbjct 18970036 TTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 18970005 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || ||||| ||||| || || ||||| | || | | || Sbjct 18970447 CGTAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCA 18970388 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 18970387 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTG 18970328 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || ||| | || || |||| || || Sbjct 18970327 TCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCAGAGGACTCAACCTCCAGGGTGATG 18970268 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 18970267 GTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 18970233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827049044068