Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 7e-16 seq1 95.1 8e-15 seq6 87.8 1e-12 seq5 86.0 4e-12 >seq9 Length=15534364 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||||| || ||||| ||| || || |||||||| || | Sbjct 9034774 CCACCCCTGAGCCGGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCC 9034715 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || |||||||| || || ||||| ||||||||||| |||||| | || Sbjct 9034714 AGTGTGCGTCCATCCTCCAATTGCTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGA 9034655 Query 33643 ACACCTTCTTTGTC 33656 | |||||| ||||| Sbjct 9034654 ATACCTTCCTTGTC 9034641 >seq1 Length=32922458 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| | || || Sbjct 9819694 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTC 9819635 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| ||||||||| || |||| | || || ||||| Sbjct 9819634 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 9819575 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | |||||| || ||||| || | ||||||||| | Sbjct 9819574 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 9819516 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 9819515 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 9819485 >seq6 Length=21016138 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || |||||| || ||||||||||| | | ||||||| | || ||| Sbjct 17541129 ACCAAATGGAGCGTTGACTCTTTCTGGATGTTGTAATCAGCTAATGTGCGTCCATCTTCC 17541070 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||| || || |||||||| | | ||||||||| | || | ||| |||||||| Sbjct 17541069 AATTGCTTCCCAGCAAAAATTAGCCTTTGCTGATCTGGGGGGATACCCTCTTTGTC 17541014 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | || ||||| |||| |||| || || |||||||| Sbjct 18970196 CTCCTTCTGNATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 18970137 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || ||||| || || ||| ||| | Sbjct 18970136 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTT-AACGT 18970078 Query 33678 AGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 |||| ||||| || || || |||| |||||| || || ||||| | || || | Sbjct 18970077 TGTCAATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCTGTCAGGGTCTTGA 18970018 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 18970017 CGAAGATCTGCATA 18970004 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||| |||||| || || ||| || || || ||||||||||| | Sbjct 18970460 ACCACCACGGAGGCGTAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGC 18970401 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||| ||||||||| || |||| Sbjct 18970400 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGG 18970341 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || ||| |||| ||| | ||||| || || | Sbjct 18970340 AATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTGTCAATAGTGTCAGAGGACTCAA 18970282 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || ||||||||||| Sbjct 18970281 CCTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 18970233 >seq5 Length=20807039 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || ||||||||||| | ||| ||||| |||| || | ||| Sbjct 6507908 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGGCCGTCCTCAAGTTGC 6507967 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| || | |||||||| || | || | ||| || ||||| ||| || Sbjct 6507968 TTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTT- 6508026 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| ||| | || || ||||| || |||| || || || || || || Sbjct 6508027 GGCTTTGACATTGTCGATTGTATCAGAGGATTCAACCTCAAGGGTTATGGTCTTGCCAGT 6508086 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 6508087 GAGTGTCTTCACAAAGATCTGCAT 6508110 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | |||||| || || ||| ||| || || |||||||| || | Sbjct 16644194 ACCACCCCTGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 16644135 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||| || || ||||| || |||| |||||||| ||| | || Sbjct 16644134 GAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 16644075 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| |||| ||| ||| | ||||| ||| || | Sbjct 16644074 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCGATCGTGTCTGATGACTCAA 16644016 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || | || || || ||||||||||| Sbjct 16644015 CCTCGAGTGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 16643967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703951927040