Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-21 seq5 104 6e-17 seq4 98.7 2e-15 seq1 98.7 2e-15 seq6 95.1 3e-14 seq8 89.7 1e-12 seq3 87.8 4e-12 >seq2 Length=26406337 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || |||||||| |||||||| | || || ||||| ||||| Sbjct 20340910 CAGATCTTTGTGAAGACCCTTACAGGAAAGACGATCACACTTGAGGTTGAAAGCTCTGAT 20340851 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| || || || || || || || || || Sbjct 20340850 ACAATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAG 20340791 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || ||||||||| | ||||||||| | || ||||| || |||||| || Sbjct 20340790 AGGCTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGCACGTTGGCTGACTACAACATC 20340731 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||||||||| | ||| || | || || Sbjct 20340730 CAGAAGGAGTCTACTCTTCATTTGGTTCTGCGTCTCCG 20340693 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| |||| || || || || ||| Sbjct 2676559 CAGATCTTCGTCAAGACCTTGACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCCGAC 2676500 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| |||||| || Sbjct 2676499 ACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGGATTCCCCCGGACCAGCAG 2676440 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 2676439 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAACATC 2676380 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || |||||||| || Sbjct 2676379 CAGAAGGAGTCAACCCTTCACCTGGT 2676354 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || |||||| | || || || || ||||| ||| |||| Sbjct 20340670 AAGACCCTTACAGGAAAGACTATCACTCTTGAGGTAGAGAGCTCTGATACAATCGACAAT 20340611 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || | || || || || || || || Sbjct 20340610 GTCAAGGCCAAGATCCAGGACAAGGAGGGGATCTCTCCTGATCAGCAGAGGCTAATATTT 20340551 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| ||||||| || | || ||||| ||||||||| | ||||| |||||| Sbjct 20340550 GCTGGGAAACAGCTGGAAGACGGGCGCACATTGGCTGATTACAACATTCAGAAGGAGTCT 20340491 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 20340490 ACTCTTCAC 20340482 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || ||| | |||||||||||||| ||||||| || ||||||||||| || Sbjct 20340693 CGGAGACGCAGAACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAACGTG 20340752 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| ||||||||||| || ||||| |||| || ||| Sbjct 20340753 CGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGA 20340797 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| ||| ||||| |||| Sbjct 2677003 AAGACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACTATCGACAAT 2676944 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || | || |||||| Sbjct 2676943 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTC 2676884 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || ||||| | || || |||||| ||||||| ||||| Sbjct 2676883 GCCGGCAAGCAGCTGGAGGACGGCAGGACCCTCGCTGACTACAACATCCAGAAGGAGTCG 2676824 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 2676823 ACCCTCCACCTTGT 2676810 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || || ||||| ||||||| || |||||||| | ||||| || || ||| Sbjct 2676810 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCGTCCTCC 2676869 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| || || || || Sbjct 2676870 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTG 2676901 >seq5 Length=20807039 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| | || ||||| |||||| || | || || ||| | Sbjct 16643763 ACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGATACCATTGACAATGTCAAGGCA 16643822 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || |||||| || ||| || | || ||||| || || ||| Sbjct 16643823 AAGATTCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTTGCTGGCAAG 16643882 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| |||||| | || ||||||||| ||||||| ||||| || |||||| Sbjct 16643883 CAGCTCGAGGATGGCAGGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCAC 16643942 Query 206374 CTTGT 206378 ||||| Sbjct 16643943 CTTGT 16643947 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||| |||| || || || ||| Sbjct 6507879 CAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTGGAGGTCGAGTCCTCGGAC 6507820 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || || || || || || ||| || || || Sbjct 6507819 ACGATCGACAACGTGAAGGCGAAAATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 6507760 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| |||| ||||| |||||||| | Sbjct 6507759 CGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGGACGTTGGCAGATTACAATATT 6507700 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| || || ||||||||||||||| | || || Sbjct 6507699 CAGAAGGAATCCACTCTTCACCTTGTTCTTAGGCT 6507665 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 || || | ||||||||||||||| || || ||||| | ||| || || ||||| |||| Sbjct 6507665 AGCCTAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCCAACGTCCGA 6507724 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| || |||||||| || ||||||||||| || || ||| Sbjct 6507725 CCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGA 6507766 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 2856498 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 2856439 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || | || |||||| Sbjct 2856438 GTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAGCAGCGCCTCATCTTC 2856379 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 2856378 GCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 2856319 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2856318 ACCCTCCACCTCGT 2856305 >seq4 Length=23326293 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || | |||||| |||| Sbjct 20245451 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTTTGACACCATCGACAAC 20245510 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| || | || ||||| Sbjct 20245511 GTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAGCGTCTCATCTTT 20245570 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | || | ||||| || ||| ||||||| ||||| Sbjct 20245571 GCTGGGAAGCAGCTGGAGGATGGGCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCC 20245630 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 20245631 ACTCTCCACCTTGT 20245644 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| |||||||| || ||||| | ||||||||||| | ||| | ||||| ||| Sbjct 20245416 ACAAGGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCAGCAAGAGTGCGGCCATCCTCC 20245357 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || |||||||| || || || Sbjct 20245356 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTG 20245325 >seq1 Length=32922458 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 9819500 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 9819559 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 9819560 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGTCTGATCTTC 9819619 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || | ||||| |||||| ||||||| ||||| Sbjct 9819620 GCCGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCG 9819679 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9819680 ACCCTGCACCTGGT 9819693 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| || | Sbjct 18387059 AAGACCCTGACCGGGAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACGATCCAGAAC 18387118 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| | || || || |||||||| |||||||| || | || |||||| Sbjct 18387119 GTGAAGGCGAAGGTGCAGGACAAGGAAGGAATCATGCCGGACCAGCAGCGGCTCATCTTC 18387178 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || | | || | ||||| |||||| ||||||| ||||| Sbjct 18387179 GCCGGCAAGCAGCTGGAGGACGACCGCACGCTTGCCGACTACAACATCCAGAAGGAGTCG 18387238 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 18387239 ACGCTGCACCTCGT 18387252 >seq6 Length=21016138 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| | || || || |||||||| |||| || ||| Sbjct 18969573 ACTGGTAAGACGATCACCCTTGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGGCC 18969632 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || || |||||| || | || ||||| ||||| ||| Sbjct 18969633 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTTGCCGGCAAG 18969692 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| |||||| | || |||| || |||||| ||||||| ||||||||||| ||| Sbjct 18969693 CAGCTGGAGGATGGACGTACCCTGGCTGACTACAACATCCAGAAGGAGTCTACTCTCCAC 18969752 Query 206374 CTTGT 206378 || || Sbjct 18969753 CTGGT 18969757 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||||||||| ||||||| || |||||||||| || | |||||| ||| Sbjct 18969757 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCATCCTCC 18969698 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| ||||| || || || || Sbjct 18969697 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTG 18969666 >seq8 Length=20165712 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 206227 TCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC 206286 ||||||||| | || || ||| |||||||| || || || || ||| |||||| Sbjct 3967900 TCTGACACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 3967841 Query 206287 GCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 || | || ||||||||||| |||||| | || || || | ||| | || || ||| Sbjct 3967840 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAAGGCCGTACTCTTGCTGACTAC 3967781 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| | ||||| ||||| |||||||||||||| Sbjct 3967780 AACATTCAGAAGGAGTCAACTCTTCACCTTGT 3967749 >seq3 Length=29602667 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 206271 AGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAG 206330 |||||| ||||||| || || | ||||||||||| |||||| |||| |||||| | Sbjct 6373857 AGGAATCCCGCCGGACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTGGAGGATGGACG 6373798 Query 206331 GACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||| || |||||| ||||||| || ||||| || |||||||| Sbjct 6373797 CACCCTGGCTGACTACAACATCCAGAAGGAATCTACCCTCCACCTTGT 6373750 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || ||||| || ||||||| || |||||||||| || | |||||| ||| Sbjct 6373750 ACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCATCCTCC 6373809 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 |||||||| ||||||||||| Sbjct 6373810 AGCTGCTTCCCGGCGAAGAT 6373829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820618295052