Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq9 123 7e-24 seq7 91.5 4e-14 >seq9 Length=15534364 Score = 123 bits (136), Expect = 7e-24 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 20220 TTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCC 20279 |||| || || ||||||||||| ||| ||| ||||| |||||| ||||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 20280 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 20339 | ||||| ||||| || ||||||||||||||| |||| || || || ||| ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 20340 TTAATCTGAACGGTTTCAACTTTAACCAGTC 20370 | || || ||||| ||||| || ||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq7 Length=22540073 Score = 91.5 bits (100), Expect = 4e-14 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 19594 CTGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACC 19653 || || ||||||||| ||||| || || | ||| | || |||||||| || | ||| || Sbjct 5747998 CTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCC 5748057 Query 19654 CGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA--GC 19711 || || | | |||||||||||||| || || || || ||| | |||| | | Sbjct 5748058 TGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTC 5748117 Query 19712 AGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGG 19771 || || |||||| | ||||| |||||||||||||||||| || ||||||| | | Sbjct 5748118 TGC--GGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAG 5748175 Query 19772 CTCTACAACGG 19782 || | ||| || Sbjct 5748176 CTATGCAATGG 5748186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828778791896