Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq9 120 9e-23 seq7 98.7 3e-16 >seq9 Length=15534364 Score = 120 bits (132), Expect = 9e-23 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 29348 TTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCC 29407 |||| || || ||||||||||||||| ||| || || |||||| ||||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 29408 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 29467 | ||||| ||||| || ||||||||||||||| |||| || || || ||| ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 29468 TTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 | || || ||||| || || || ||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq7 Length=22540073 Score = 98.7 bits (108), Expect = 3e-16 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 28722 CTGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACC 28781 || || ||||||||| ||||| || || | ||| | || |||||||| || | ||| || Sbjct 5747998 CTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCC 5748057 Query 28782 TGTCGCTGGAAGTCTT--CTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA-- 28837 |||| || || |||| || ||||||||||| || || || || ||| | | || | Sbjct 5748058 TGTCTCT--AATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACT 5748115 Query 28838 GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAAT 28897 | || || |||||| | ||||| |||||||||||||||||| || ||||||| | Sbjct 5748116 TCTGC--GGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 5748173 Query 28898 GGCTCTACAACGG 28910 ||| | ||| || Sbjct 5748174 AGCTATGCAATGG 5748186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665579100152