Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq7 105 2e-18 seq9 87.8 5e-13 >seq7 Length=22540073 Score = 105 bits (116), Expect = 2e-18 Identities = 138/187 (74%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 18819 CATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGC 18878 ||||||||||||||| || || |||| |||| |||||||| || | ||||||||| | Sbjct 5748004 CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGT--C 5748061 Query 18879 AGGCAGTCTT--CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA--GCAGCA 18934 | |||| |||||||||||||| || || || || ||| | |||| | | || Sbjct 5748062 TCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGC- 5748120 Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 18994 || |||||| | ||||| |||||||||||||||||| || ||||||| | ||| | Sbjct 5748121 -GGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTAT 5748179 Query 18995 ACAACGG 19001 ||| || Sbjct 5748180 GCAATGG 5748186 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| |||||||| || || ||||| ||||| |||||||| || |||||||||||| Sbjct 5747417 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTT 5747476 Query 18877 GCAGGCAGTCTTCTTTATGGAAACA 18901 | || | | ||||||||||||| Sbjct 5747477 TCTGGTTCTTTACTTTATGGAAACA 5747501 >seq9 Length=15534364 Score = 87.8 bits (96), Expect = 5e-13 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || || ||||| |||||| |||| ||||| | Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 |||||||||||||||| || || |||||||| | || | || | || || ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGT 19613 ||||| | || || || || || ||||| || | |||| | ||| ||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCAA-GGTCGCGT 12953954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148779886296