Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 seq5 82.4 7e-11 >seq6 Length=21016138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/212 (70%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| | ||||||||| |||||||| ||| || ||| ||| ||||||| | Sbjct 6618264 AAGGCCGATTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCT 6618209 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGC-AGTTTTGCCGCCATTTTTT 46893 ||||||||||| ||||| || | || || |||||| ||| || |||||| || | Sbjct 6618208 CGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTTCTG-CGCCATCTTCT 6618150 Query 46894 ACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 | |||| ||| | |||||||| || || ||| |||||| | ||||| |||| Sbjct 6618149 GGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAACGAGCTCATCTCCCGCG 6618090 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTC 46985 |||| || || ||| ||||| || || ||| Sbjct 6618089 ACGAGGGTCTCCACTGCGACTTCGCCTGCCTC 6618058 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| ||| || ||||| || |||| | Sbjct 18969742 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCATCCTCCAGCTGCTTGCCGGCA 18969683 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || | Sbjct 18969682 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 18969623 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||| || || | || | ||| |||||||||| || || Sbjct 18969622 TTGTCGATGGTGTCAGACGACTCGACCTCAAGGGTGATCGTCTTACCAGTCAAGGTCTTC 18969563 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 18969562 ACGAAGATCTGCATG 18969548 >seq5 Length=20807039 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| | ||| || || |||||||| || |||| | Sbjct 6507461 GATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCA 6507520 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || ||||| || |||||||| || || ||| || |||| Sbjct 6507521 AAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTCACG 6507580 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||| || || | || | || || || ||||| || || Sbjct 6507581 TTATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGTCTTGCCTGTCAGGGTCTTG 6507640 Query 132110 ATGAAAATCTGCATGACT 132127 | |||||||||||| || Sbjct 6507641 ACAAAAATCTGCATGCCT 6507658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611128508320