Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq9 125 9e-24 seq8 123 3e-23 seq7 84.2 3e-11 >seq9 Length=15534364 Score = 125 bits (138), Expect = 9e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 181696 TTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCC 181755 |||| || || ||||||||||||||| || |||||||| ||||| | ||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 181756 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 181815 | || || ||||||||||| || || |||||||| || | || | || || ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 181816 TTAACCTCAATGGATTCAACTTCAACCAGTCT 181847 | ||||| || |||||||| |||||||| ||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCT 12953932 >seq8 Length=20165712 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 183183 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGAT 183242 || ||||| || || ||||| ||||| ||||| || || || | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 183243 CCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGG 183302 ||||| || ||||| |||||||| || || || ||| | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 183303 TTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGA 183362 ||||| || ||||| || |||||||| | || |||||||| || |||||||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 183363 GGTAACGCACT 183373 || ||||| || Sbjct 4128808 GGAAACGCTCT 4128818 >seq7 Length=22540073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 181083 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 181142 |||||| |||| || | || | || || || || || | || || ||| || ||| Sbjct 5748011 GCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCT 5748070 Query 181143 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 181202 | | ||||| ||||| || ||||||||||| || |||| |||| || || || Sbjct 5748071 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 5748130 Query 181203 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 181262 | ||||| || || || |||||||| ||||| ||||||||| ||| | || |||| | Sbjct 5748131 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGAT 5748190 Query 181263 CCTT 181266 |||| Sbjct 5748191 CCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614617507807360