Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq8 123 4e-23 seq9 113 7e-20 seq7 91.5 2e-13 seq5 89.7 8e-13 >seq8 Length=20165712 Score = 123 bits (136), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 176673 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGAT 176732 || ||||| || || ||||| ||||| ||||| ||| || || | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 176733 CCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGG 176792 ||||| ||||| ||||||||||| || || || ||| | ||||| || | | || ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 176793 ATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGA 176852 |||||| || |||||| || ||||| || ||||||| || || |||||||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 176853 GGTAACGC 176860 || ||||| Sbjct 4128808 GGAAACGC 4128815 >seq9 Length=15534364 Score = 113 bits (124), Expect = 7e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 175185 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTA 175244 || || || ||||||||||| ||| || |||||||| || || | ||||||||||| Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 175245 GCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTC 175304 || || ||||| || || || || |||||||| || | ||| || || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 175305 AACCTCAATGGTTTCAACTTCAACCAGTCTGT 175336 ||||| || || ||||| |||||||| ||||| Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGT 12953934 >seq7 Length=22540073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||||| || ||| || || | || || ||||| | ||||| ||| | || || || Sbjct 5747934 ACCAAAAACCGTGACAACATCAGATGATTATGTGTTTTGATGATCCCTGCCTTATTGACC 5747993 Query 174549 GCAACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATC 174608 | | || | || |||||| || ||| | | || | ||| | || || || || || Sbjct 5747994 GTAGCT-TCTG---CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATT 5748049 Query 174609 CGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTT 174668 | || || || || ||| | | ||||||||||| || ||||||||||| || || Sbjct 5748050 CACGAGCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 5748109 Query 174669 CCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGAC 174728 |||| ||| || ||||| | ||||| |||||||| |||||||| || | | || Sbjct 5748110 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 5748169 Query 174729 GAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGT 174766 || | ||| | ||| |||| ||||| | ||| |||| Sbjct 5748170 GAGTAGCTATGCAATGGTGATCCTTATAAGCTAATTGT 5748207 >seq5 Length=20807039 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 176325 TTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACA 176384 ||||| || ||||| || ||| ||||| | | || | || || || || || ||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 176385 CTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCA 176444 ||||||| || ||||||||||||||||| || || |||| | || | |||| || Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 176445 ATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 || ||||| | || || ||||| || |||| ||| || || || Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929490510560