Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq9 120 3e-22 seq8 111 2e-19 seq5 111 2e-19 >seq9 Length=15534364 Score = 120 bits (132), Expect = 3e-22 Identities = 131/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || || || ||||||||||| ||| || |||||||| ||||| || ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 159268 ||||| ||||| ||||| |||||||| || | ||||| | || ||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq8 Length=20165712 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 160721 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGAT 160780 || ||||| || || ||||| || || || || || || || | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 160781 CCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGG 160840 || ||||||||||| ||||||||||| || || || | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 160841 TTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGA 160900 | ||| || || || || ||||| || |||| ||||| || || ||||| || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 160901 GGCAACGCCCTTTAAT 160916 || ||||| ||||||| Sbjct 4128808 GGAAACGCTCTTTAAT 4128823 >seq5 Length=20807039 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 160373 TTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACG 160432 ||||| || ||||| || ||| ||||| | | ||| | ||||||||||| || |||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 160433 CTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCC 160492 | ||||| || ||||||||||||||||| || || |||| | || |||| | || Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 160493 ATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTT 160551 || ||||| | || || || ||||| || | ||| || || || ||||||||||| Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552473517128960